Analysis of interatomic Contacts of Structural Units in PDB entry:
8F9R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F9R entry

There are 2 chains in PDB entry 8F9R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 22	ILE 511
B	LYS 22	ILE 511

There are 32 helices in PDB entry 8F9R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	127	132	Right-handed alpha
Helix 2	AA2	A	133	137	Right-handed 310
Helix 3	AA3	A	139	146	Right-handed alpha
Helix 4	AA4	A	147	151	Right-handed 310
Helix 5	AA5	A	181	186	Right-handed alpha
Helix 6	AA6	A	194	209	Right-handed alpha
Helix 7	AA7	A	223	228	Right-handed alpha
Helix 8	AA8	A	229	237	Right-handed alpha
Helix 9	AA9	A	256	263	Right-handed alpha
Helix 10	AB1	A	264	269	Right-handed 310
Helix 11	AB2	A	279	283	Right-handed 310
Helix 12	AB3	A	286	288	Right-handed 310
Helix 13	AB4	A	289	309	Right-handed alpha
Helix 14	AB5	A	335	344	Right-handed alpha
Helix 15	AB6	A	382	397	Right-handed alpha
Helix 16	AB7	A	470	473	Right-handed 310
Helix 17	AB8	B	127	132	Right-handed alpha
Helix 18	AB9	B	133	137	Right-handed 310
Helix 19	AC1	B	139	145	Right-handed alpha
Helix 20	AC2	B	147	151	Right-handed 310
Helix 21	AC3	B	181	186	Right-handed alpha
Helix 22	AC4	B	194	209	Right-handed alpha
Helix 23	AC5	B	223	228	Right-handed alpha
Helix 24	AC6	B	229	237	Right-handed alpha
Helix 25	AC7	B	256	263	Right-handed alpha
Helix 26	AC8	B	264	269	Right-handed 310
Helix 27	AC9	B	279	283	Right-handed 310
Helix 28	AD1	B	286	288	Right-handed 310
Helix 29	AD2	B	289	309	Right-handed alpha
Helix 30	AD3	B	335	344	Right-handed alpha
Helix 31	AD4	B	382	397	Right-handed alpha
Helix 32	AD5	B	470	473	Right-handed 310

There are 12 sheets in PDB entry 8F9R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	A	46	50	anti-parallel
Strand 3	A	82	86	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	39	first strand
Strand 2	A	107	126	parallel
Strand 3	A	212	216	parallel
Strand 4	A	153	158	parallel
Strand 5	A	173	178	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	74	first strand
Strand 2	A	56	63	anti-parallel
Strand 3	A	93	104	anti-parallel
Strand 4	A	107	126	anti-parallel
Strand 5	A	273	277	parallel
Strand 6	A	319	322	parallel
Strand 7	A	359	362	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	416	first strand
Strand 2	A	421	426	anti-parallel
Strand 3	A	464	468	anti-parallel
Strand 4	A	457	460	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	432	first strand
Strand 2	A	495	496	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	440	444	anti-parallel
Strand 3	A	476	481	anti-parallel
Strand 4	A	507	510	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	B	46	50	anti-parallel
Strand 3	B	82	86	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	39	first strand
Strand 2	B	107	126	parallel
Strand 3	B	212	216	parallel
Strand 4	B	153	158	parallel
Strand 5	B	173	178	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	74	first strand
Strand 2	B	56	63	anti-parallel
Strand 3	B	93	104	anti-parallel
Strand 4	B	107	126	anti-parallel
Strand 5	B	273	277	parallel
Strand 6	B	319	322	parallel
Strand 7	B	359	362	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	416	first strand
Strand 2	B	421	426	anti-parallel
Strand 3	B	464	468	anti-parallel
Strand 4	B	457	460	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	432	first strand
Strand 2	B	495	496	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	440	444	anti-parallel
Strand 3	B	476	481	anti-parallel
Strand 4	B	507	510	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F9R

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F9R