Analysis of interatomic Contacts of Structural Units in PDB entry:
8F9X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F9X entry

There are 10 chains in PDB entry 8F9X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 43	VAL 272
B	GLY 45	VAL 272
C	GLY 47	VAL 272
D	GLU 48	VAL 272
E	ILE 46	VAL 272
F	GLU 48	VAL 272
G	GLY 45	VAL 272
H	GLY 45	VAL 272
I	ILE 46	VAL 272
J	MET 43	VAL 272

There are 90 helices in PDB entry 8F9X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	76	81	Right-handed alpha
Helix 2	AA2	A	99	104	Right-handed 310
Helix 3	AA3	A	109	113	Right-handed 310
Helix 4	AA4	A	115	117	Right-handed 310
Helix 5	AA5	A	127	132	Right-handed alpha
Helix 6	AA6	A	140	152	Right-handed alpha
Helix 7	AA7	A	166	170	Right-handed 310
Helix 8	AA8	A	190	201	Right-handed alpha
Helix 9	AA9	A	221	228	Right-handed alpha
Helix 10	AB1	A	229	231	Right-handed 310
Helix 11	AB2	A	240	244	Right-handed 310
Helix 12	AB3	B	99	104	Right-handed 310
Helix 13	AB4	B	114	117	Right-handed 310
Helix 14	AB5	B	127	134	Right-handed alpha
Helix 15	AB6	B	140	152	Right-handed alpha
Helix 16	AB7	B	190	200	Right-handed alpha
Helix 17	AB8	B	221	228	Right-handed alpha
Helix 18	AB9	B	240	244	Right-handed 310
Helix 19	AC1	C	100	104	Right-handed 310
Helix 20	AC2	C	109	113	Right-handed 310
Helix 21	AC3	C	115	117	Right-handed 310
Helix 22	AC4	C	127	132	Right-handed alpha
Helix 23	AC5	C	140	152	Right-handed alpha
Helix 24	AC6	C	166	170	Right-handed 310
Helix 25	AC7	C	190	200	Right-handed alpha
Helix 26	AC8	C	221	228	Right-handed alpha
Helix 27	AC9	C	240	244	Right-handed 310
Helix 28	AD1	D	76	81	Right-handed alpha
Helix 29	AD2	D	114	117	Right-handed 310
Helix 30	AD3	D	127	134	Right-handed alpha
Helix 31	AD4	D	140	152	Right-handed alpha
Helix 32	AD5	D	166	170	Right-handed 310
Helix 33	AD6	D	190	200	Right-handed alpha
Helix 34	AD7	D	221	228	Right-handed alpha
Helix 35	AD8	D	229	231	Right-handed 310
Helix 36	AD9	D	240	244	Right-handed 310
Helix 37	AE1	E	99	104	Right-handed 310
Helix 38	AE2	E	109	113	Right-handed 310
Helix 39	AE3	E	114	117	Right-handed 310
Helix 40	AE4	E	140	152	Right-handed alpha
Helix 41	AE5	E	166	171	Right-handed 310
Helix 42	AE6	E	172	176	Right-handed 310
Helix 43	AE7	E	190	201	Right-handed alpha
Helix 44	AE8	E	221	228	Right-handed alpha
Helix 45	AE9	F	99	104	Right-handed 310
Helix 46	AF1	F	114	117	Right-handed 310
Helix 47	AF2	F	127	132	Right-handed alpha
Helix 48	AF3	F	140	152	Right-handed alpha
Helix 49	AF4	F	165	172	Right-handed 310
Helix 50	AF5	F	190	201	Right-handed alpha
Helix 51	AF6	F	221	228	Right-handed alpha
Helix 52	AF7	F	229	231	Right-handed 310
Helix 53	AF8	F	240	244	Right-handed 310
Helix 54	AF9	G	99	104	Right-handed 310
Helix 55	AG1	G	114	117	Right-handed 310
Helix 56	AG2	G	127	134	Right-handed alpha
Helix 57	AG3	G	140	152	Right-handed alpha
Helix 58	AG4	G	166	170	Right-handed 310
Helix 59	AG5	G	190	200	Right-handed alpha
Helix 60	AG6	G	221	226	Right-handed alpha
Helix 61	AG7	G	227	231	Right-handed 310
Helix 62	AG8	G	240	244	Right-handed 310
Helix 63	AG9	H	99	104	Right-handed 310
Helix 64	AH1	H	127	132	Right-handed alpha
Helix 65	AH2	H	140	152	Right-handed alpha
Helix 66	AH3	H	166	171	Right-handed 310
Helix 67	AH4	H	172	176	Right-handed 310
Helix 68	AH5	H	190	201	Right-handed alpha
Helix 69	AH6	H	221	228	Right-handed alpha
Helix 70	AH7	H	229	231	Right-handed 310
Helix 71	AH8	I	76	81	Right-handed alpha
Helix 72	AH9	I	100	104	Right-handed 310
Helix 73	AI1	I	109	113	Right-handed 310
Helix 74	AI2	I	114	118	Right-handed alpha
Helix 75	AI3	I	127	134	Right-handed alpha
Helix 76	AI4	I	140	152	Right-handed alpha
Helix 77	AI5	I	166	171	Right-handed 310
Helix 78	AI6	I	190	200	Right-handed alpha
Helix 79	AI7	I	221	226	Right-handed alpha
Helix 80	AI8	I	227	231	Right-handed 310
Helix 81	AI9	J	100	104	Right-handed 310
Helix 82	AJ1	J	114	117	Right-handed 310
Helix 83	AJ2	J	127	132	Right-handed alpha
Helix 84	AJ3	J	140	152	Right-handed alpha
Helix 85	AJ4	J	166	170	Right-handed 310
Helix 86	AJ5	J	172	176	Right-handed 310
Helix 87	AJ6	J	190	201	Right-handed alpha
Helix 88	AJ7	J	221	228	Right-handed alpha
Helix 89	AJ8	J	229	231	Right-handed 310
Helix 90	AJ9	J	240	244	Right-handed 310

There are 28 sheets in PDB entry 8F9X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	267	270	anti-parallel
Strand 3	A	249	254	anti-parallel
Strand 4	A	119	126	anti-parallel
Strand 5	A	159	163	parallel
Strand 6	A	205	207	parallel
Strand 7	A	233	236	parallel
Strand 8	A	96	98	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	75	first strand
Strand 2	A	84	90	anti-parallel
Strand 3	B	84	90	anti-parallel
Strand 4	B	69	75	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	139	first strand
Strand 2	A	188	189	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	267	271	anti-parallel
Strand 3	B	247	254	anti-parallel
Strand 4	B	119	126	anti-parallel
Strand 5	B	159	163	parallel
Strand 6	B	205	208	parallel
Strand 7	B	233	236	parallel
Strand 8	B	96	98	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	139	first strand
Strand 2	B	188	189	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	51	first strand
Strand 2	C	267	271	anti-parallel
Strand 3	C	250	254	anti-parallel
Strand 4	C	119	126	anti-parallel
Strand 5	C	159	163	parallel
Strand 6	C	205	208	parallel
Strand 7	C	233	236	parallel
Strand 8	C	96	98	anti-parallel
Strand 9	C	263	265	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	74	first strand
Strand 2	C	84	86	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	90	first strand
Strand 2	D	84	89	anti-parallel
Strand 3	D	69	75	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	139	first strand
Strand 2	C	188	189	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	51	first strand
Strand 2	D	267	271	anti-parallel
Strand 3	D	247	254	anti-parallel
Strand 4	D	119	126	anti-parallel
Strand 5	D	159	163	parallel
Strand 6	D	205	207	parallel
Strand 7	D	233	236	parallel
Strand 8	D	96	98	anti-parallel
Strand 9	D	263	265	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	139	first strand
Strand 2	D	188	189	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	51	first strand
Strand 2	E	269	271	anti-parallel
Strand 3	E	250	252	anti-parallel
Strand 4	E	119	126	anti-parallel
Strand 5	E	159	163	parallel
Strand 6	E	205	208	parallel
Strand 7	E	233	236	parallel
Strand 8	E	96	98	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	75	first strand
Strand 2	E	84	90	anti-parallel
Strand 3	F	84	90	anti-parallel
Strand 4	F	73	75	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	138	139	first strand
Strand 2	E	188	189	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	51	first strand
Strand 2	F	267	271	anti-parallel
Strand 3	F	250	254	anti-parallel
Strand 4	F	119	126	anti-parallel
Strand 5	F	159	163	parallel
Strand 6	F	205	208	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	96	98	first strand
Strand 2	F	234	236	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	138	139	first strand
Strand 2	F	188	189	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	69	73	first strand
Strand 2	G	85	90	anti-parallel
Strand 3	H	84	90	anti-parallel
Strand 4	H	69	75	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	96	98	first strand
Strand 2	G	233	236	anti-parallel
Strand 3	G	205	207	parallel
Strand 4	G	159	163	parallel
Strand 5	G	119	126	parallel
Strand 6	G	250	254	anti-parallel
Strand 7	G	267	271	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	138	139	first strand
Strand 2	G	188	189	parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	51	first strand
Strand 2	H	267	271	anti-parallel
Strand 3	H	250	254	anti-parallel
Strand 4	H	119	126	anti-parallel
Strand 5	H	159	163	parallel
Strand 6	H	205	208	parallel
Strand 7	H	233	236	parallel
Strand 8	H	96	98	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	138	139	first strand
Strand 2	H	188	189	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	48	51	first strand
Strand 2	I	267	272	anti-parallel
Strand 3	I	251	254	anti-parallel
Strand 4	I	119	120	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	69	75	first strand
Strand 2	I	84	90	anti-parallel
Strand 3	J	84	90	anti-parallel
Strand 4	J	69	75	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	122	126	first strand
Strand 2	I	158	163	parallel
Strand 3	I	203	207	parallel
Strand 4	I	233	236	parallel
Strand 5	I	96	98	anti-parallel
Strand 6	I	263	265	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	138	139	first strand
Strand 2	I	188	189	parallel

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There are 9 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	50	51	first strand
Strand 2	J	267	271	anti-parallel
Strand 3	J	250	254	anti-parallel
Strand 4	J	119	126	anti-parallel
Strand 5	J	159	163	parallel
Strand 6	J	205	208	parallel
Strand 7	J	233	236	parallel
Strand 8	J	96	98	anti-parallel
Strand 9	J	263	265	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	138	139	first strand
Strand 2	J	188	189	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F9X

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F9X