Analysis of interatomic Contacts of Structural Units in PDB entry:
8F9Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F9Y entry

There is 1 chain in PDB entry 8F9Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8F9Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 27Right-handed alpha
Helix 2
AA2
A
33 37Right-handed 310
Helix 3
AA3
A
39 61Right-handed alpha
Helix 4
AA4
A
82 97Right-handed alpha
Helix 5
AA5
A
109 119Right-handed alpha
Helix 6
AA6
A
138 144Right-handed alpha
Helix 7
AA7
A
237 249Right-handed alpha
Helix 8
AA8
A
260 268Right-handed alpha
Helix 9
AA9
A
285 288Right-handed 310
Helix 10
AB1
A
289 298Right-handed alpha
Helix 11
AB2
A
332 346Right-handed alpha
Helix 12
AB3
A
348 352Right-handed 310
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There are 2 sheets in PDB entry 8F9Y. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 69first strand
Strand 2
A
129 137parallel
Strand 3
A
149 156anti-parallel
Strand 4
A
159 171anti-parallel
Strand 5
A
188 195anti-parallel
Strand 6
A
199 204anti-parallel
Strand 7
A
212 213anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 256first strand
Strand 2
A
227 229parallel
Strand 3
A
273 276parallel
Strand 4
A
325 328anti-parallel
Strand 5
A
302 305anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il