Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 8FA2 entry
There are 6 chains in PDB entry 8FA2
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
A
|
GLU 918 | GLU 988 |
B
|
GLU 918 | GLU 988 |
C
|
GLU 918 | GLU 988 |
D
|
HIS 1159 | LEU 1201 |
E
|
HIS 1159 | LEU 1201 |
F
|
HIS 1159 | LEU 1201 |
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There are 12
helices in PDB entry 8FA2. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
| Helix 1 |
AA1 | A
| 918 |
988 | Right-handed alpha |
| Helix 2 |
AA2 | B
| 919 |
988 | Right-handed alpha |
| Helix 3 |
AA3 | C
| 919 |
988 | Right-handed alpha |
| Helix 4 |
AA4 | D
| 1169 |
1173 | Right-handed 310 |
| Helix 5 |
AA5 | D
| 1180 |
1194 | Right-handed alpha |
| Helix 6 |
AA6 | D
| 1195 |
1197 | Right-handed 310 |
| Helix 7 |
AA7 | E
| 1169 |
1173 | Right-handed 310 |
| Helix 8 |
AA8 | E
| 1180 |
1194 | Right-handed alpha |
| Helix 9 |
AA9 | E
| 1195 |
1197 | Right-handed 310 |
| Helix 10 |
AB1 | F
| 1169 |
1173 | Right-handed 310 |
| Helix 11 |
AB2 | F
| 1180 |
1194 | Right-handed alpha |
| Helix 12 |
AB3 | F
| 1195 |
1197 | Right-handed 310 |
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There are no sheets in PDB entry
8FA2
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il