Analysis of interatomic Contacts of Structural Units in PDB entry:
8FA4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FA4 entry

There are 2 chains in PDB entry 8FA4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLN 44	ASN 555
A	THR 45	ASN 555

There are 39 helices in PDB entry 8FA4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	79	85	Right-handed 310
Helix 2	AA2	B	86	94	Right-handed alpha
Helix 3	AA3	B	104	108	Right-handed alpha
Helix 4	AA4	B	116	129	Right-handed alpha
Helix 5	AA5	B	150	155	Right-handed alpha
Helix 6	AA6	B	178	200	Right-handed alpha
Helix 7	AA7	B	224	232	Right-handed alpha
Helix 8	AA8	B	236	244	Right-handed alpha
Helix 9	AA9	B	249	255	Right-handed alpha
Helix 10	AB1	B	257	282	Right-handed alpha
Helix 11	AB2	B	293	297	Right-handed 310
Helix 12	AB3	B	300	305	Right-handed 310
Helix 13	AB4	B	310	312	Right-handed 310
Helix 14	AB5	B	313	321	Right-handed alpha
Helix 15	AB6	B	335	347	Right-handed alpha
Helix 16	AB7	B	361	366	Right-handed 310
Helix 17	AB8	B	367	373	Right-handed alpha
Helix 18	AB9	B	400	416	Right-handed alpha
Helix 19	AC1	B	417	427	Right-handed alpha
Helix 20	AC2	B	502	506	Right-handed 310
Helix 21	AC3	B	531	536	Right-handed alpha
Helix 22	AC4	A	79	85	Right-handed 310
Helix 23	AC5	A	86	94	Right-handed alpha
Helix 24	AC6	A	104	108	Right-handed alpha
Helix 25	AC7	A	116	129	Right-handed alpha
Helix 26	AC8	A	150	155	Right-handed alpha
Helix 27	AC9	A	178	200	Right-handed alpha
Helix 28	AD1	A	224	232	Right-handed alpha
Helix 29	AD2	A	236	244	Right-handed alpha
Helix 30	AD3	A	249	255	Right-handed alpha
Helix 31	AD4	A	257	282	Right-handed alpha
Helix 32	AD5	A	313	321	Right-handed alpha
Helix 33	AD6	A	335	347	Right-handed alpha
Helix 34	AD7	A	361	366	Right-handed 310
Helix 35	AD8	A	367	373	Right-handed alpha
Helix 36	AD9	A	400	416	Right-handed alpha
Helix 37	AE1	A	417	427	Right-handed alpha
Helix 38	AE2	A	502	506	Right-handed 310
Helix 39	AE3	A	531	536	Right-handed alpha

There are 12 sheets in PDB entry 8FA4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	53	first strand
Strand 2	B	56	61	anti-parallel
Strand 3	B	64	66	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	212	first strand
Strand 2	B	132	142	parallel
Strand 3	B	97	103	parallel
Strand 4	B	68	72	parallel
Strand 5	B	378	382	parallel
Strand 6	B	354	355	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	164	first strand
Strand 2	B	170	174	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	291	first strand
Strand 2	B	326	331	parallel
Strand 3	B	357	358	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	434	first strand
Strand 2	B	476	483	anti-parallel
Strand 3	B	486	492	anti-parallel
Strand 4	B	547	553	anti-parallel
Strand 5	B	508	519	anti-parallel
Strand 6	B	522	528	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	445	first strand
Strand 2	B	450	456	anti-parallel
Strand 3	B	494	500	anti-parallel
Strand 4	B	538	540	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	53	first strand
Strand 2	A	56	61	anti-parallel
Strand 3	A	64	66	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	212	first strand
Strand 2	A	132	142	parallel
Strand 3	A	97	103	parallel
Strand 4	A	68	72	parallel
Strand 5	A	378	382	parallel
Strand 6	A	354	355	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	164	first strand
Strand 2	A	170	174	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	291	first strand
Strand 2	A	326	331	parallel
Strand 3	A	357	358	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	434	first strand
Strand 2	A	476	483	anti-parallel
Strand 3	A	486	492	anti-parallel
Strand 4	A	547	553	anti-parallel
Strand 5	A	508	519	anti-parallel
Strand 6	A	522	528	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	445	first strand
Strand 2	A	450	455	anti-parallel
Strand 3	A	494	500	anti-parallel
Strand 4	A	538	540	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FA4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FA4