Analysis of interatomic Contacts of Structural Units in PDB entry:
8FA5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FA5 entry

There are 2 chains in PDB entry 8FA5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLN 6	LYS 590
A	GLN 6	LYS 590

There are 43 helices in PDB entry 8FA5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	32	36	Right-handed 310
Helix 2	AA2	B	37	39	Right-handed 310
Helix 3	AA3	B	40	52	Right-handed alpha
Helix 4	AA4	B	61	66	Right-handed alpha
Helix 5	AA5	B	75	78	Right-handed 310
Helix 6	AA6	B	79	90	Right-handed alpha
Helix 7	AA7	B	106	111	Right-handed 310
Helix 8	AA8	B	112	117	Right-handed 310
Helix 9	AA9	B	127	146	Right-handed alpha
Helix 10	AB1	B	147	153	Right-handed 310
Helix 11	AB2	B	164	168	Right-handed 310
Helix 12	AB3	B	171	186	Right-handed alpha
Helix 13	AB4	B	187	190	Right-handed 310
Helix 14	AB5	B	200	205	Right-handed alpha
Helix 15	AB6	B	219	231	Right-handed alpha
Helix 16	AB7	B	257	271	Right-handed alpha
Helix 17	AB8	B	322	337	Right-handed alpha
Helix 18	AB9	B	364	366	Right-handed 310
Helix 19	AC1	B	378	383	Right-handed 310
Helix 20	AC2	B	427	429	Right-handed 310
Helix 21	AC3	B	490	494	Right-handed 310
Helix 22	AC4	B	554	558	Right-handed 310
Helix 23	AC5	A	37	39	Right-handed 310
Helix 24	AC6	A	40	52	Right-handed alpha
Helix 25	AC7	A	61	66	Right-handed alpha
Helix 26	AC8	A	75	78	Right-handed 310
Helix 27	AC9	A	79	90	Right-handed alpha
Helix 28	AD1	A	106	111	Right-handed 310
Helix 29	AD2	A	112	117	Right-handed 310
Helix 30	AD3	A	127	146	Right-handed alpha
Helix 31	AD4	A	147	153	Right-handed 310
Helix 32	AD5	A	164	168	Right-handed 310
Helix 33	AD6	A	171	185	Right-handed alpha
Helix 34	AD7	A	186	190	Right-handed 310
Helix 35	AD8	A	200	205	Right-handed alpha
Helix 36	AD9	A	219	231	Right-handed alpha
Helix 37	AE1	A	257	271	Right-handed alpha
Helix 38	AE2	A	322	337	Right-handed alpha
Helix 39	AE3	A	364	366	Right-handed 310
Helix 40	AE4	A	378	383	Right-handed 310
Helix 41	AE5	A	427	429	Right-handed 310
Helix 42	AE6	A	490	494	Right-handed 310
Helix 43	AE7	A	554	558	Right-handed 310

There are 14 sheets in PDB entry 8FA5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	16	19	anti-parallel
Strand 3	B	22	24	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	30	first strand
Strand 2	B	55	59	parallel
Strand 3	B	93	97	parallel
Strand 4	B	156	160	parallel
Strand 5	B	191	197	parallel
Strand 6	B	210	215	parallel
Strand 7	B	237	242	parallel
Strand 8	B	274	278	parallel
Strand 9	B	27	30	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	292	293	first strand
Strand 2	B	303	304	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	356	first strand
Strand 2	B	577	581	anti-parallel
Strand 3	B	520	523	anti-parallel
Strand 4	B	550	553	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	498	first strand
Strand 2	B	359	362	anti-parallel
Strand 3	B	506	514	anti-parallel
Strand 4	B	561	569	anti-parallel
Strand 5	B	529	534	anti-parallel
Strand 6	B	537	543	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	373	first strand
Strand 2	B	481	486	anti-parallel
Strand 3	B	388	404	anti-parallel
Strand 4	B	432	449	anti-parallel
Strand 5	B	411	416	anti-parallel
Strand 6	B	419	425	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	373	first strand
Strand 2	B	481	486	anti-parallel
Strand 3	B	388	404	anti-parallel
Strand 4	B	472	473	anti-parallel
Strand 5	B	476	477	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	16	19	anti-parallel
Strand 3	A	22	24	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	A	55	59	parallel
Strand 3	A	93	97	parallel
Strand 4	A	156	160	parallel
Strand 5	A	191	197	parallel
Strand 6	A	210	215	parallel
Strand 7	A	237	242	parallel
Strand 8	A	274	278	parallel
Strand 9	A	27	30	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	293	first strand
Strand 2	A	303	304	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	356	first strand
Strand 2	A	577	581	anti-parallel
Strand 3	A	520	523	anti-parallel
Strand 4	A	550	553	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	362	first strand
Strand 2	A	506	514	anti-parallel
Strand 3	A	561	569	anti-parallel
Strand 4	A	529	534	anti-parallel
Strand 5	A	537	543	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	373	first strand
Strand 2	A	481	486	anti-parallel
Strand 3	A	388	404	anti-parallel
Strand 4	A	432	449	anti-parallel
Strand 5	A	411	416	anti-parallel
Strand 6	A	419	425	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	373	first strand
Strand 2	A	481	486	anti-parallel
Strand 3	A	388	404	anti-parallel
Strand 4	A	472	473	anti-parallel
Strand 5	A	476	477	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FA5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FA5