Analysis of interatomic Contacts of Structural Units in PDB entry:
8FAD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FAD entry

There are 5 chains in PDB entry 8FAD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 520	GLU 657
C	LYS 33	ARG 503
D	LEU 520	GLU 657
E	LYS 33	ARG 503
A	LYS 33	VAL 89

There are 37 helices in PDB entry 8FAD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	529	536	Right-handed alpha
Helix 2	AA2	B	536	564	Right-handed alpha
Helix 3	AA3	B	569	596	Right-handed alpha
Helix 4	AA4	B	618	625	Right-handed alpha
Helix 5	AA5	B	627	635	Right-handed alpha
Helix 6	AA6	B	638	657	Right-handed alpha
Helix 7	AA7	C	58	64	Right-handed alpha
Helix 8	AA8	C	98	117	Right-handed alpha
Helix 9	AA9	C	122	126	Right-handed 310
Helix 10	AB1	C	177	181	Right-handed 310
Helix 11	AB2	C	335	353	Right-handed alpha
Helix 12	AB3	C	368	373	Right-handed alpha
Helix 13	AB4	C	474	484	Right-handed alpha
Helix 14	AB5	D	529	535	Right-handed alpha
Helix 15	AB6	D	538	564	Right-handed alpha
Helix 16	AB7	D	569	596	Right-handed alpha
Helix 17	AB8	D	618	626	Right-handed alpha
Helix 18	AB9	D	627	634	Right-handed alpha
Helix 19	AC1	D	635	657	Right-handed alpha
Helix 20	AC2	E	56	64	Right-handed alpha
Helix 21	AC3	E	98	117	Right-handed alpha
Helix 22	AC4	E	122	126	Right-handed 310
Helix 23	AC5	E	335	353	Right-handed alpha
Helix 24	AC6	E	368	373	Right-handed alpha
Helix 25	AC7	E	474	483	Right-handed alpha
Helix 26	AC8	A	58	64	Right-handed alpha
Helix 27	AC9	A	98	117	Right-handed alpha
Helix 28	AD1	A	335	353	Right-handed alpha
Helix 29	AD2	A	368	373	Right-handed alpha
Helix 30	AD3	A	474	481	Right-handed alpha
Helix 31	AD4	F	523	528	Right-handed 310
Helix 32	AD5	F	529	536	Right-handed alpha
Helix 33	AD6	F	536	543	Right-handed alpha
Helix 34	AD7	F	570	596	Right-handed alpha
Helix 35	AD8	F	619	625	Right-handed alpha
Helix 36	AD9	F	627	635	Right-handed alpha
Helix 37	AE1	F	637	657	Right-handed alpha

There are 28 sheets in PDB entry 8FAD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	609	610	first strand
Strand 2	A	34	40	anti-parallel
Strand 3	A	494	499	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	494	499	first strand
Strand 2	C	34	40	anti-parallel
Strand 3	D	603	604	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	494	499	first strand
Strand 2	C	34	40	anti-parallel
Strand 3	D	609	610	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	486	491	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	84	86	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	94	first strand
Strand 2	C	236	238	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	174	first strand
Strand 2	C	157	162	anti-parallel
Strand 3	C	129	131	anti-parallel
Strand 4	C	190	192	anti-parallel
Strand 5	C	182	183	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	443	457	anti-parallel
Strand 3	C	284	298	anti-parallel
Strand 4	C	330	334	anti-parallel
Strand 5	C	413	420	anti-parallel
Strand 6	C	381	385	anti-parallel
Strand 7	C	374	378	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	273	first strand
Strand 2	C	284	298	anti-parallel
Strand 3	C	443	457	anti-parallel
Strand 4	C	467	470	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	308	first strand
Strand 2	C	316	323	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	423	424	first strand
Strand 2	C	434	435	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	495	499	first strand
Strand 2	E	35	39	anti-parallel
Strand 3	F	604	609	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	486	491	anti-parallel
Strand 3	E	223	228	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	83	86	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	94	first strand
Strand 2	E	236	238	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	131	first strand
Strand 2	E	157	162	anti-parallel
Strand 3	E	169	174	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	181	183	first strand
Strand 2	E	191	193	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	201	203	first strand
Strand 2	E	433	435	parallel
Strand 3	E	423	425	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	260	261	first strand
Strand 2	E	443	457	anti-parallel
Strand 3	E	283	298	anti-parallel
Strand 4	E	271	274	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	260	261	first strand
Strand 2	E	443	457	anti-parallel
Strand 3	E	467	470	anti-parallel
Strand 4	E	360	361	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	301	308	first strand
Strand 2	E	316	323	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	329	334	first strand
Strand 2	E	413	420	anti-parallel
Strand 3	E	381	385	anti-parallel
Strand 4	E	374	378	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	84	86	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	236	238	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	157	161	anti-parallel
Strand 3	A	170	174	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	191	193	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	203	first strand
Strand 2	A	433	435	parallel
Strand 3	A	423	425	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	261	first strand
Strand 2	A	443	457	anti-parallel
Strand 3	A	284	298	anti-parallel
Strand 4	A	467	470	first strand
Strand 5	A	360	361	parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	298	anti-parallel
Strand 3	A	443	457	anti-parallel
Strand 4	A	330	334	first strand
Strand 5	A	413	420	anti-parallel
Strand 6	A	381	385	anti-parallel
Strand 7	A	374	378	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	308	first strand
Strand 2	A	316	323	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FAD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FAD