Analysis of interatomic Contacts of Structural Units in PDB entry:
8FAR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FAR entry

There are 2 chains in PDB entry 8FAR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 3ASN 138
B
 MET 1GLU 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 8FAR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 17Right-handed alpha
Helix 2
AA2
A
19 34Right-handed alpha
Helix 3
AA3
A
37 51Right-handed alpha
Helix 4
AA4
A
53 68Right-handed alpha
Helix 5
AA5
A
71 86Right-handed alpha
Helix 6
AA6
A
87 102Right-handed alpha
Helix 7
AA7
A
105 120Right-handed alpha
Helix 8
AA8
A
121 136Right-handed alpha
Helix 9
AA9
B
2 9Right-handed alpha
Helix 10
AB1
B
18 32Right-handed alpha
Helix 11
AB2
B
45 53Right-handed alpha
Helix 12
AB3
B
55 60Right-handed alpha
Helix 13
AB4
B
70 81Right-handed alpha
Helix 14
AB5
B
91 102Right-handed alpha
Helix 15
AB6
B
111 121Right-handed alpha
Helix 16
AB7
B
130 135Right-handed alpha
Helix 17
AB8
B
135 143Right-handed alpha
Helix 18
AB9
B
161 169Right-handed alpha
Helix 19
AC1
B
176 181Right-handed alpha
Helix 20
AC2
B
183 202Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 8FAR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 66first strand
Strand 2
B
36 40parallel
Strand 3
B
10 14parallel
Strand 4
B
173 175parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 86first strand
Strand 2
B
104 106parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 109first strand
Strand 2
B
125 128parallel
Strand 3
B
150 153parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il