Analysis of interatomic Contacts of Structural Units in PDB entry:
8FAY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FAY entry

There are 10 chains in PDB entry 8FAY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 86	GLY 507
B	A 1	C 5
B	T 7	C 11
C	T 12	A 17
C	G 19	T 22
D	TYR 84	GLY 507
E	A 1	C 5
E	T 7	C 11
F	T 12	A 17
F	G 19	T 22

There are 41 helices in PDB entry 8FAY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	89	108	Right-handed alpha
Helix 2	AA2	A	111	120	Right-handed alpha
Helix 3	AA3	A	122	138	Right-handed alpha
Helix 4	AA4	A	141	146	Right-handed alpha
Helix 5	AA5	A	148	156	Right-handed alpha
Helix 6	AA6	A	158	165	Right-handed alpha
Helix 7	AA7	A	166	175	Right-handed alpha
Helix 8	AA8	A	180	197	Right-handed alpha
Helix 9	AA9	A	204	212	Right-handed alpha
Helix 10	AB1	A	216	229	Right-handed alpha
Helix 11	AB2	A	236	247	Right-handed alpha
Helix 12	AB3	A	255	270	Right-handed alpha
Helix 13	AB4	A	274	289	Right-handed alpha
Helix 14	AB5	A	296	300	Right-handed 310
Helix 15	AB6	A	302	305	Right-handed 310
Helix 16	AB7	A	306	318	Right-handed alpha
Helix 17	AB8	A	350	358	Right-handed 310
Helix 18	AB9	A	412	429	Right-handed alpha
Helix 19	AC1	A	432	436	Right-handed 310
Helix 20	AC2	A	478	483	Right-handed alpha
Helix 21	AC3	A	487	501	Right-handed alpha
Helix 22	AC4	D	89	108	Right-handed alpha
Helix 23	AC5	D	111	120	Right-handed alpha
Helix 24	AC6	D	122	137	Right-handed alpha
Helix 25	AC7	D	141	156	Right-handed alpha
Helix 26	AC8	D	158	165	Right-handed alpha
Helix 27	AC9	D	166	175	Right-handed alpha
Helix 28	AD1	D	180	197	Right-handed alpha
Helix 29	AD2	D	204	212	Right-handed alpha
Helix 30	AD3	D	216	229	Right-handed alpha
Helix 31	AD4	D	236	247	Right-handed alpha
Helix 32	AD5	D	255	270	Right-handed alpha
Helix 33	AD6	D	274	289	Right-handed alpha
Helix 34	AD7	D	296	300	Right-handed 310
Helix 35	AD8	D	302	305	Right-handed 310
Helix 36	AD9	D	306	316	Right-handed alpha
Helix 37	AE1	D	350	358	Right-handed 310
Helix 38	AE2	D	412	429	Right-handed alpha
Helix 39	AE3	D	432	436	Right-handed 310
Helix 40	AE4	D	478	483	Right-handed alpha
Helix 41	AE5	D	487	501	Right-handed alpha

There are 4 sheets in PDB entry 8FAY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	403	first strand
Strand 2	A	386	391	anti-parallel
Strand 3	A	368	379	anti-parallel
Strand 4	A	449	459	parallel
Strand 5	A	437	445	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	408	first strand
Strand 2	A	368	379	anti-parallel
Strand 3	A	386	391	anti-parallel
Strand 4	A	473	477	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	402	403	first strand
Strand 2	D	386	391	anti-parallel
Strand 3	D	368	379	anti-parallel
Strand 4	D	449	459	parallel
Strand 5	D	437	445	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	406	408	first strand
Strand 2	D	368	379	anti-parallel
Strand 3	D	386	391	anti-parallel
Strand 4	D	473	477	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FAY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FAY