Analysis of interatomic Contacts of Structural Units in PDB entry:
8FBM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FBM entry

There are 2 chains in PDB entry 8FBM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 41	PHE 466
B	PRO 41	GLU 203

There are 37 helices in PDB entry 8FBM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	48	Right-handed 310
Helix 2	AA2	A	95	109	Right-handed alpha
Helix 3	AA3	A	122	131	Right-handed alpha
Helix 4	AA4	A	136	138	Right-handed 310
Helix 5	AA5	A	181	184	Right-handed 310
Helix 6	AA6	A	188	202	Right-handed alpha
Helix 7	AA7	A	231	238	Right-handed alpha
Helix 8	AA8	A	248	257	Right-handed alpha
Helix 9	AA9	A	271	273	Right-handed 310
Helix 10	AB1	A	274	290	Right-handed alpha
Helix 11	AB2	A	293	298	Right-handed alpha
Helix 12	AB3	A	304	306	Right-handed 310
Helix 13	AB4	A	309	314	Right-handed alpha
Helix 14	AB5	A	315	317	Right-handed 310
Helix 15	AB6	A	322	327	Right-handed 310
Helix 16	AB7	A	337	345	Right-handed alpha
Helix 17	AB8	A	400	415	Right-handed alpha
Helix 18	AB9	A	428	433	Right-handed alpha
Helix 19	AC1	A	457	459	Right-handed 310
Helix 20	AC2	B	44	48	Right-handed 310
Helix 21	AC3	B	95	109	Right-handed alpha
Helix 22	AC4	B	122	131	Right-handed alpha
Helix 23	AC5	B	136	138	Right-handed 310
Helix 24	AC6	B	181	184	Right-handed 310
Helix 25	AC7	B	187	202	Right-handed alpha
Helix 26	AC8	B	231	238	Right-handed alpha
Helix 27	AC9	B	248	257	Right-handed alpha
Helix 28	AD1	B	271	273	Right-handed 310
Helix 29	AD2	B	274	290	Right-handed alpha
Helix 30	AD3	B	293	298	Right-handed alpha
Helix 31	AD4	B	304	306	Right-handed 310
Helix 32	AD5	B	311	317	Right-handed 310
Helix 33	AD6	B	322	327	Right-handed 310
Helix 34	AD7	B	337	345	Right-handed alpha
Helix 35	AD8	B	400	415	Right-handed alpha
Helix 36	AD9	B	428	433	Right-handed alpha
Helix 37	AE1	B	457	459	Right-handed 310

There are 10 sheets in PDB entry 8FBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	64	first strand
Strand 2	A	451	452	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	87	first strand
Strand 2	A	140	145	anti-parallel
Strand 3	A	151	164	anti-parallel
Strand 4	A	167	179	anti-parallel
Strand 5	A	301	302	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	87	first strand
Strand 2	A	140	145	anti-parallel
Strand 3	A	151	164	anti-parallel
Strand 4	A	332	335	anti-parallel
Strand 5	A	461	462	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	119	first strand
Strand 2	A	364	377	anti-parallel
Strand 3	A	385	391	anti-parallel
Strand 4	A	419	423	parallel
Strand 5	A	221	229	anti-parallel
Strand 6	A	438	449	anti-parallel
Strand 7	A	208	212	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	119	first strand
Strand 2	A	364	377	anti-parallel
Strand 3	A	352	358	anti-parallel
Strand 4	A	267	269	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	320	first strand
Strand 2	B	60	64	anti-parallel
Strand 3	B	451	452	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	87	first strand
Strand 2	B	140	145	anti-parallel
Strand 3	B	150	164	anti-parallel
Strand 4	B	167	179	anti-parallel
Strand 5	B	301	302	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	87	first strand
Strand 2	B	140	145	anti-parallel
Strand 3	B	150	164	anti-parallel
Strand 4	B	332	335	anti-parallel
Strand 5	B	461	462	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	119	first strand
Strand 2	B	364	377	anti-parallel
Strand 3	B	385	391	anti-parallel
Strand 4	B	419	423	parallel
Strand 5	B	221	229	anti-parallel
Strand 6	B	438	449	anti-parallel
Strand 7	B	208	212	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	119	first strand
Strand 2	B	364	377	anti-parallel
Strand 3	B	352	358	anti-parallel
Strand 4	B	267	269	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FBM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FBM