Analysis of interatomic Contacts of Structural Units in PDB entry:
8FBZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FBZ entry

There are 2 chains in PDB entry 8FBZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	TRP 5	VAL 474
A	THR 3	VAL 474

There are 41 helices in PDB entry 8FBZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	5	9	Right-handed 310
Helix 2	AA2	B	11	29	Right-handed alpha
Helix 3	AA3	B	59	81	Right-handed alpha
Helix 4	AA4	B	82	97	Right-handed alpha
Helix 5	AA5	B	97	114	Right-handed alpha
Helix 6	AA6	B	152	157	Right-handed alpha
Helix 7	AA7	B	159	170	Right-handed alpha
Helix 8	AA8	B	172	179	Right-handed alpha
Helix 9	AA9	B	183	200	Right-handed alpha
Helix 10	AB1	B	216	229	Right-handed alpha
Helix 11	AB2	B	238	245	Right-handed alpha
Helix 12	AB3	B	271	275	Right-handed 310
Helix 13	AB4	B	276	289	Right-handed alpha
Helix 14	AB5	B	296	303	Right-handed alpha
Helix 15	AB6	B	304	311	Right-handed alpha
Helix 16	AB7	B	315	321	Right-handed alpha
Helix 17	AB8	B	324	334	Right-handed alpha
Helix 18	AB9	B	344	357	Right-handed alpha
Helix 19	AC1	B	375	387	Right-handed alpha
Helix 20	AC2	B	389	393	Right-handed 310
Helix 21	AC3	A	5	9	Right-handed 310
Helix 22	AC4	A	11	29	Right-handed alpha
Helix 23	AC5	A	59	81	Right-handed alpha
Helix 24	AC6	A	82	91	Right-handed alpha
Helix 25	AC7	A	92	97	Right-handed alpha
Helix 26	AC8	A	97	114	Right-handed alpha
Helix 27	AC9	A	152	157	Right-handed alpha
Helix 28	AD1	A	159	170	Right-handed alpha
Helix 29	AD2	A	172	179	Right-handed alpha
Helix 30	AD3	A	183	200	Right-handed alpha
Helix 31	AD4	A	216	229	Right-handed alpha
Helix 32	AD5	A	238	245	Right-handed alpha
Helix 33	AD6	A	271	275	Right-handed 310
Helix 34	AD7	A	276	289	Right-handed alpha
Helix 35	AD8	A	296	303	Right-handed alpha
Helix 36	AD9	A	304	311	Right-handed alpha
Helix 37	AE1	A	315	321	Right-handed alpha
Helix 38	AE2	A	324	334	Right-handed alpha
Helix 39	AE3	A	344	357	Right-handed alpha
Helix 40	AE4	A	375	387	Right-handed alpha
Helix 41	AE5	A	389	393	Right-handed 310

There are 12 sheets in PDB entry 8FBZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	34	first strand
Strand 2	B	45	47	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	146	first strand
Strand 2	B	119	131	anti-parallel
Strand 3	B	419	435	anti-parallel
Strand 4	B	438	454	anti-parallel
Strand 5	B	462	469	anti-parallel
Strand 6	B	50	51	parallel
Strand 7	B	406	411	anti-parallel
Strand 8	B	419	435	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	58	first strand
Strand 2	B	471	474	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	237	first strand
Strand 2	B	205	209	parallel
Strand 3	B	259	266	parallel
Strand 4	B	254	256	anti-parallel
Strand 5	B	246	248	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	237	first strand
Strand 2	B	205	209	parallel
Strand 3	B	259	266	parallel
Strand 4	B	292	294	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	395	399	anti-parallel
Strand 3	B	361	365	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	45	47	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	146	first strand
Strand 2	A	119	132	anti-parallel
Strand 3	A	419	435	anti-parallel
Strand 4	A	438	453	anti-parallel
Strand 5	A	467	469	anti-parallel
Strand 6	A	50	51	parallel
Strand 7	A	406	411	anti-parallel
Strand 8	A	419	435	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	58	first strand
Strand 2	A	471	474	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	237	first strand
Strand 2	A	205	209	parallel
Strand 3	A	259	266	parallel
Strand 4	A	254	256	anti-parallel
Strand 5	A	246	248	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	237	first strand
Strand 2	A	205	209	parallel
Strand 3	A	259	266	parallel
Strand 4	A	292	294	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	395	399	anti-parallel
Strand 3	A	361	365	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FBZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FBZ