Analysis of interatomic Contacts of Structural Units in PDB entry:
8FD1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FD1 entry

There are 4 chains in PDB entry 8FD1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1CYS 323
B
 MET 1CYS 323
C
 GLN 1VAL 114
D
 GLN 1VAL 114
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8FD1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 50Right-handed alpha
Helix 2
AA2
A
50 64Right-handed alpha
Helix 3
AA3
A
71 90Right-handed alpha
Helix 4
AA4
A
90 101Right-handed alpha
Helix 5
AA5
A
106 140Right-handed alpha
Helix 6
AA6
A
152 169Right-handed alpha
Helix 7
AA7
A
169 174Right-handed alpha
Helix 8
AA8
A
199 211Right-handed alpha
Helix 9
AA9
A
212 224Right-handed alpha
Helix 10
AB1
A
225 228Right-handed 310
Helix 11
AB2
A
242 278Right-handed alpha
Helix 12
AB3
A
284 295Right-handed alpha
Helix 13
AB4
A
297 309Right-handed alpha
Helix 14
AB5
A
310 322Right-handed alpha
Helix 15
AB6
B
33 50Right-handed alpha
Helix 16
AB7
B
50 65Right-handed alpha
Helix 17
AB8
B
70 90Right-handed alpha
Helix 18
AB9
B
90 101Right-handed alpha
Helix 19
AC1
B
106 140Right-handed alpha
Helix 20
AC2
B
150 169Right-handed alpha
Helix 21
AC3
B
169 174Right-handed alpha
Helix 22
AC4
B
199 211Right-handed alpha
Helix 23
AC5
B
212 224Right-handed alpha
Helix 24
AC6
B
225 228Right-handed 310
Helix 25
AC7
B
242 278Right-handed alpha
Helix 26
AC8
B
284 295Right-handed alpha
Helix 27
AC9
B
297 309Right-handed alpha
Helix 28
AD1
B
310 322Right-handed alpha
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There are 10 sheets in PDB entry 8FD1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
10 11anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 180first strand
Strand 2
A
187 189anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
10 11anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 180first strand
Strand 2
B
187 189anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 4first strand
Strand 2
C
24 25anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 20first strand
Strand 2
C
78 84anti-parallel
Strand 3
C
68 73anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 60first strand
Strand 2
C
46 51anti-parallel
Strand 3
C
34 39anti-parallel
Strand 4
C
92 95anti-parallel
Strand 5
C
111 112anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 4first strand
Strand 2
D
24 25anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 20first strand
Strand 2
D
78 84anti-parallel
Strand 3
D
68 73anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 60first strand
Strand 2
D
46 51anti-parallel
Strand 3
D
34 39anti-parallel
Strand 4
D
92 95anti-parallel
Strand 5
D
111 112anti-parallel
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