Analysis of interatomic Contacts of Structural Units in PDB entry:
8FD3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FD3 entry

There are 13 chains in PDB entry 8FD3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1ILE 212
B
LEU 5THR 220
C
PRO 12LEU 319
D
PRO 12LEU 319
E
PRO 12LEU 319
F
PRO 12LEU 319
G
PRO 12LEU 319
H
PRO 12GLU 320
I
THR 5PRO 498
J
ASN 4ASP 112
K
ASN 4ASP 112
L
ASN 4ASP 112
M
U 1 G 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are118 helices in PDB entry 8FD3. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
32 45Right-handed alpha
Helix 2
AA2
A
84 86Right-handed 310
Helix 3
AA3
A
115 126Right-handed alpha
Helix 4
AA4
A
127 130Right-handed 310
Helix 5
AA5
A
201 205Right-handed 310
Helix 6
AA6
B
28 39Right-handed alpha
Helix 7
AA7
B
40 45Right-handed alpha
Helix 8
AA8
B
79 82Right-handed 310
Helix 9
AA9
B
83 88Right-handed alpha
Helix 10
AB1
B
127 143Right-handed alpha
Helix 11
AB2
B
185 196Right-handed alpha
Helix 12
AB3
B
200 204Right-handed 310
Helix 13
AB4
B
211 220Right-handed alpha
Helix 14
AB5
C
47 49Right-handed 310
Helix 15
AB6
C
56 71Right-handed alpha
Helix 16
AB7
C
98 105Right-handed alpha
Helix 17
AB8
C
193 195Right-handed 310
Helix 18
AB9
C
196 206Right-handed alpha
Helix 19
AC1
C
211 215Right-handed 310
Helix 20
AC2
C
255 265Right-handed alpha
Helix 21
AC3
C
268 270Right-handed 310
Helix 22
AC4
C
277 284Right-handed alpha
Helix 23
AC5
C
301 318Right-handed alpha
Helix 24
AC6
D
47 49Right-handed 310
Helix 25
AC7
D
56 71Right-handed alpha
Helix 26
AC8
D
98 105Right-handed alpha
Helix 27
AC9
D
189 191Right-handed 310
Helix 28
AD1
D
193 195Right-handed 310
Helix 29
AD2
D
196 206Right-handed alpha
Helix 30
AD3
D
255 265Right-handed alpha
Helix 31
AD4
D
268 270Right-handed 310
Helix 32
AD5
D
277 284Right-handed alpha
Helix 33
AD6
D
291 296Right-handed 310
Helix 34
AD7
D
301 318Right-handed alpha
Helix 35
AD8
E
56 71Right-handed alpha
Helix 36
AD9
E
98 105Right-handed alpha
Helix 37
AE1
E
189 191Right-handed 310
Helix 38
AE2
E
193 195Right-handed 310
Helix 39
AE3
E
196 206Right-handed alpha
Helix 40
AE4
E
255 265Right-handed alpha
Helix 41
AE5
E
268 270Right-handed 310
Helix 42
AE6
E
277 284Right-handed alpha
Helix 43
AE7
E
291 296Right-handed 310
Helix 44
AE8
E
301 318Right-handed alpha
Helix 45
AE9
F
56 71Right-handed alpha
Helix 46
AF1
F
98 105Right-handed alpha
Helix 47
AF2
F
193 195Right-handed 310
Helix 48
AF3
F
196 206Right-handed alpha
Helix 49
AF4
F
256 265Right-handed alpha
Helix 50
AF5
F
268 270Right-handed 310
Helix 51
AF6
F
277 284Right-handed alpha
Helix 52
AF7
F
291 296Right-handed 310
Helix 53
AF8
F
301 318Right-handed alpha
Helix 54
AF9
G
47 49Right-handed 310
Helix 55
AG1
G
56 71Right-handed alpha
Helix 56
AG2
G
98 105Right-handed alpha
Helix 57
AG3
G
189 191Right-handed 310
Helix 58
AG4
G
193 195Right-handed 310
Helix 59
AG5
G
196 206Right-handed alpha
Helix 60
AG6
G
255 264Right-handed alpha
Helix 61
AG7
G
268 270Right-handed 310
Helix 62
AG8
G
277 284Right-handed alpha
Helix 63
AG9
G
301 318Right-handed alpha
Helix 64
AH1
H
47 49Right-handed 310
Helix 65
AH2
H
56 71Right-handed alpha
Helix 66
AH3
H
98 104Right-handed alpha
Helix 67
AH4
H
109 112Right-handed 310
Helix 68
AH5
H
189 191Right-handed 310
Helix 69
AH6
H
193 195Right-handed 310
Helix 70
AH7
H
196 206Right-handed alpha
Helix 71
AH8
H
255 265Right-handed alpha
Helix 72
AH9
H
268 270Right-handed 310
Helix 73
AI1
H
277 285Right-handed alpha
Helix 74
AI2
H
291 296Right-handed 310
Helix 75
AI3
H
301 317Right-handed alpha
Helix 76
AI4
I
19 40Right-handed alpha
Helix 77
AI5
I
46 50Right-handed 310
Helix 78
AI6
I
66 78Right-handed alpha
Helix 79
AI7
I
98 113Right-handed alpha
Helix 80
AI8
I
116 118Right-handed 310
Helix 81
AI9
I
148 157Right-handed alpha
Helix 82
AJ1
I
183 187Right-handed 310
Helix 83
AJ2
I
195 205Right-handed alpha
Helix 84
AJ3
I
206 208Right-handed 310
Helix 85
AJ4
I
238 250Right-handed alpha
Helix 86
AJ5
I
251 252Right-handed 310
Helix 87
AJ6
I
253 256Right-handed 310
Helix 88
AJ7
I
261 270Right-handed alpha
Helix 89
AJ8
I
312 325Right-handed alpha
Helix 90
AJ9
I
342 355Right-handed alpha
Helix 91
AK1
I
361 367Right-handed alpha
Helix 92
AK2
I
373 382Right-handed alpha
Helix 93
AK3
I
382 392Right-handed alpha
Helix 94
AK4
I
397 421Right-handed alpha
Helix 95
AK5
I
428 443Right-handed alpha
Helix 96
AK6
I
445 460Right-handed alpha
Helix 97
AK7
I
463 469Right-handed alpha
Helix 98
AK8
I
469 480Right-handed alpha
Helix 99
AK9
I
481 495Right-handed alpha
Helix 100
AL1
J
6 33Right-handed alpha
Helix 101
AL2
J
41 53Right-handed alpha
Helix 102
AL3
J
58 72Right-handed alpha
Helix 103
AL4
J
75 81Right-handed alpha
Helix 104
AL5
J
81 91Right-handed alpha
Helix 105
AL6
J
93 107Right-handed alpha
Helix 106
AL7
J
108 112Right-handed 310
Helix 107
AL8
K
5 33Right-handed alpha
Helix 108
AL9
K
41 54Right-handed alpha
Helix 109
AM1
K
58 73Right-handed alpha
Helix 110
AM2
K
76 81Right-handed alpha
Helix 111
AM3
K
82 91Right-handed alpha
Helix 112
AM4
K
93 107Right-handed alpha
Helix 113
AM5
L
5 33Right-handed alpha
Helix 114
AM6
L
41 55Right-handed alpha
Helix 115
AM7
L
57 73Right-handed alpha
Helix 116
AM8
L
75 81Right-handed alpha
Helix 117
AM9
L
81 92Right-handed alpha
Helix 118
AN1
L
93 107Right-handed alpha
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There are 51 sheets in PDB entry 8FD3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
66 75first strand
Strand 2
A
88 106anti-parallel
Strand 3
A
56 61anti-parallel
Strand 4
A
161 165anti-parallel
Strand 5
A
186 194anti-parallel
Strand 6
A
171 176anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
147 150first strand
Strand 2
A
5 14anti-parallel
Strand 3
A
88 106anti-parallel
Strand 4
A
56 61anti-parallel
Strand 5
A
206 207anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
48 50first strand
Strand 2
B
70 76anti-parallel
Strand 3
B
7 19anti-parallel
Strand 4
B
97 101anti-parallel
Strand 5
B
91 94anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
48 50first strand
Strand 2
B
70 76anti-parallel
Strand 3
B
7 19anti-parallel
Strand 4
B
105 110anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
23 24first strand
Strand 2
B
62 63anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
147 150first strand
Strand 2
B
172 182anti-parallel
Strand 3
B
160 165anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
147 150first strand
Strand 2
B
172 182anti-parallel
Strand 3
B
115 120anti-parallel
Strand 4
B
209 210anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
43 45first strand
Strand 2
C
51 55anti-parallel
Strand 3
C
145 147anti-parallel
Strand 4
C
180 187anti-parallel
Strand 5
C
140 142anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
43 45first strand
Strand 2
C
51 55anti-parallel
Strand 3
C
145 147anti-parallel
Strand 4
C
180 187anti-parallel
Strand 5
C
15 22anti-parallel
Strand 6
C
223 231anti-parallel
Strand 7
C
272 276anti-parallel
Strand 8
C
297 299parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
25 27first strand
Strand 2
C
176 178anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
77 79first strand
Strand 2
C
86 88anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
106 107first strand
Strand 2
C
135 136anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
155 160first strand
Strand 2
C
169 174anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
242 243first strand
Strand 2
C
253 254anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
43 45first strand
Strand 2
D
51 55anti-parallel
Strand 3
D
145 147anti-parallel
Strand 4
D
180 187anti-parallel
Strand 5
D
140 142anti-parallel
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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
43 45first strand
Strand 2
D
51 55anti-parallel
Strand 3
D
145 147anti-parallel
Strand 4
D
180 187anti-parallel
Strand 5
D
15 22anti-parallel
Strand 6
D
223 231anti-parallel
Strand 7
D
272 276anti-parallel
Strand 8
D
297 299parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
25 27first strand
Strand 2
D
176 178anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
38 39first strand
Strand 2
D
172 174parallel
Strand 3
D
155 157anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
77 79first strand
Strand 2
D
86 88anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
106 107first strand
Strand 2
D
135 136anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
242 244first strand
Strand 2
D
252 254anti-parallel
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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
42 47first strand
Strand 2
E
50 55anti-parallel
Strand 3
E
145 147anti-parallel
Strand 4
E
180 187anti-parallel
Strand 5
E
140 142anti-parallel
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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
42 47first strand
Strand 2
E
50 55anti-parallel
Strand 3
E
145 147anti-parallel
Strand 4
E
180 187anti-parallel
Strand 5
E
15 21anti-parallel
Strand 6
E
225 231anti-parallel
Strand 7
E
272 276anti-parallel
Strand 8
E
297 299parallel
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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
38 39first strand
Strand 2
E
170 174parallel
Strand 3
E
155 159anti-parallel
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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
77 79first strand
Strand 2
E
86 88anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
106 107first strand
Strand 2
E
135 136anti-parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
242 244first strand
Strand 2
E
252 254anti-parallel
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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
43 46first strand
Strand 2
F
50 55anti-parallel
Strand 3
F
145 147anti-parallel
Strand 4
F
180 187anti-parallel
Strand 5
F
140 142anti-parallel
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There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
43 46first strand
Strand 2
F
50 55anti-parallel
Strand 3
F
145 147anti-parallel
Strand 4
F
180 187anti-parallel
Strand 5
F
15 22anti-parallel
Strand 6
F
223 231anti-parallel
Strand 7
F
272 276anti-parallel
Strand 8
F
297 299parallel
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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
25 26first strand
Strand 2
F
177 178anti-parallel
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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
38 39first strand
Strand 2
F
170 174parallel
Strand 3
F
155 159anti-parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
77 79first strand
Strand 2
F
86 88anti-parallel
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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
43 45first strand
Strand 2
G
51 55anti-parallel
Strand 3
G
145 147anti-parallel
Strand 4
G
180 187anti-parallel
Strand 5
G
140 142anti-parallel
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There are 8 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
43 45first strand
Strand 2
G
51 55anti-parallel
Strand 3
G
145 147anti-parallel
Strand 4
G
180 187anti-parallel
Strand 5
G
15 22anti-parallel
Strand 6
G
223 231anti-parallel
Strand 7
G
272 276anti-parallel
Strand 8
G
297 299parallel
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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
25 27first strand
Strand 2
G
176 178anti-parallel
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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
38 39first strand
Strand 2
G
170 174parallel
Strand 3
G
155 159anti-parallel
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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
77 80first strand
Strand 2
G
85 88anti-parallel
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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
106 107first strand
Strand 2
G
135 136anti-parallel
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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
242 243first strand
Strand 2
G
253 254anti-parallel
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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
43 45first strand
Strand 2
H
51 55anti-parallel
Strand 3
H
145 147anti-parallel
Strand 4
H
180 187anti-parallel
Strand 5
H
140 142anti-parallel
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There are 8 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
43 45first strand
Strand 2
H
51 55anti-parallel
Strand 3
H
145 147anti-parallel
Strand 4
H
180 187anti-parallel
Strand 5
H
15 22anti-parallel
Strand 6
H
223 231anti-parallel
Strand 7
H
272 276anti-parallel
Strand 8
H
297 299parallel
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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
25 27first strand
Strand 2
H
176 178anti-parallel
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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
38 39first strand
Strand 2
H
172 174parallel
Strand 3
H
155 157anti-parallel
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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
77 80first strand
Strand 2
H
85 88anti-parallel
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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
105 107first strand
Strand 2
H
135 137anti-parallel
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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
9 12first strand
Strand 2
I
58 62anti-parallel
Strand 3
I
51 54anti-parallel
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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
79 81first strand
Strand 2
I
87 89anti-parallel
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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
120 131first strand
Strand 2
I
136 147anti-parallel
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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
169 170first strand
Strand 2
I
193 194anti-parallel
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There are 5 strands in AF5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
258 259first strand
Strand 2
I
210 214parallel
Strand 3
I
228 234anti-parallel
Strand 4
I
282 291anti-parallel
Strand 5
I
301 311anti-parallel
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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
329 333first strand
Strand 2
I
336 340anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il