Analysis of interatomic Contacts of Structural Units in PDB entry:
8FD6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FD6 entry

There is 1 chain in PDB entry 8FD6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 88THR 3123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are121 helices in PDB entry 8FD6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
88 97Right-handed alpha
Helix 2
AA2
A
100 105Right-handed alpha
Helix 3
AA3
A
107 114Right-handed alpha
Helix 4
AA4
A
153 171Right-handed alpha
Helix 5
AA5
A
172 177Right-handed 310
Helix 6
AA6
A
178 188Right-handed alpha
Helix 7
AA7
A
191 197Right-handed 310
Helix 8
AA8
A
198 203Right-handed alpha
Helix 9
AA9
A
242 274Right-handed alpha
Helix 10
AB1
A
279 290Right-handed alpha
Helix 11
AB2
A
291 314Right-handed alpha
Helix 12
AB3
A
322 343Right-handed alpha
Helix 13
AB4
A
346 374Right-handed alpha
Helix 14
AB5
A
380 385Right-handed alpha
Helix 15
AB6
A
427 442Right-handed alpha
Helix 16
AB7
A
443 445Right-handed 310
Helix 17
AB8
A
456 468Right-handed alpha
Helix 18
AB9
A
482 497Right-handed alpha
Helix 19
AC1
A
505 508Right-handed 310
Helix 20
AC2
A
509 528Right-handed alpha
Helix 21
AC3
A
574 579Right-handed alpha
Helix 22
AC4
A
590 603Right-handed alpha
Helix 23
AC5
A
606 625Right-handed alpha
Helix 24
AC6
A
634 659Right-handed alpha
Helix 25
AC7
A
677 690Right-handed alpha
Helix 26
AC8
A
695 697Right-handed 310
Helix 27
AC9
A
698 710Right-handed alpha
Helix 28
AD1
A
720 734Right-handed alpha
Helix 29
AD2
A
745 762Right-handed alpha
Helix 30
AD3
A
774 791Right-handed alpha
Helix 31
AD4
A
805 810Right-handed alpha
Helix 32
AD5
A
823 834Right-handed alpha
Helix 33
AD6
A
838 842Right-handed 310
Helix 34
AD7
A
857 861Right-handed 310
Helix 35
AD8
A
897 904Right-handed alpha
Helix 36
AD9
A
915 929Right-handed alpha
Helix 37
AE1
A
956 969Right-handed alpha
Helix 38
AE2
A
970 972Right-handed 310
Helix 39
AE3
A
976 986Right-handed alpha
Helix 40
AE4
A
995 1021Right-handed alpha
Helix 41
AE5
A
1027 1049Right-handed alpha
Helix 42
AE6
A
1052 1067Right-handed alpha
Helix 43
AE7
A
1078 1080Right-handed 310
Helix 44
AE8
A
1094 1097Right-handed 310
Helix 45
AE9
A
1116 1132Right-handed alpha
Helix 46
AF1
A
1145 1157Right-handed alpha
Helix 47
AF2
A
1172 1184Right-handed alpha
Helix 48
AF3
A
1222 1234Right-handed alpha
Helix 49
AF4
A
1269 1274Right-handed alpha
Helix 50
AF5
A
1285 1301Right-handed alpha
Helix 51
AF6
A
1307 1309Right-handed 310
Helix 52
AF7
A
1310 1329Right-handed alpha
Helix 53
AF8
A
1340 1356Right-handed alpha
Helix 54
AF9
A
1362 1379Right-handed alpha
Helix 55
AG1
A
1384 1403Right-handed alpha
Helix 56
AG2
A
1407 1412Right-handed alpha
Helix 57
AG3
A
1430 1449Right-handed alpha
Helix 58
AG4
A
1457 1473Right-handed alpha
Helix 59
AG5
A
1487 1500Right-handed alpha
Helix 60
AG6
A
1513 1530Right-handed alpha
Helix 61
AG7
A
1546 1560Right-handed alpha
Helix 62
AG8
A
1568 1586Right-handed alpha
Helix 63
AG9
A
1591 1606Right-handed alpha
Helix 64
AH1
A
1619 1627Right-handed alpha
Helix 65
AH2
A
1628 1631Right-handed 310
Helix 66
AH3
A
1643 1656Right-handed alpha
Helix 67
AH4
A
1683 1709Right-handed alpha
Helix 68
AH5
A
1717 1765Right-handed alpha
Helix 69
AH6
A
1950 1980Right-handed alpha
Helix 70
AH7
A
1980 1995Right-handed alpha
Helix 71
AH8
A
1999 2017Right-handed alpha
Helix 72
AH9
A
2026 2031Right-handed alpha
Helix 73
AI1
A
2033 2043Right-handed alpha
Helix 74
AI2
A
2048 2060Right-handed alpha
Helix 75
AI3
A
2072 2082Right-handed alpha
Helix 76
AI4
A
2096 2108Right-handed alpha
Helix 77
AI5
A
2115 2119Right-handed 310
Helix 78
AI6
A
2120 2122Right-handed 310
Helix 79
AI7
A
2123 2129Right-handed alpha
Helix 80
AI8
A
2167 2172Right-handed alpha
Helix 81
AI9
A
2182 2199Right-handed alpha
Helix 82
AJ1
A
2199 2234Right-handed alpha
Helix 83
AJ2
A
2240 2265Right-handed alpha
Helix 84
AJ3
A
2266 2277Right-handed alpha
Helix 85
AJ4
A
2279 2296Right-handed alpha
Helix 86
AJ5
A
2306 2320Right-handed alpha
Helix 87
AJ6
A
2321 2325Right-handed 310
Helix 88
AJ7
A
2329 2351Right-handed alpha
Helix 89
AJ8
A
2352 2353Right-handed 310
Helix 90
AJ9
A
2354 2356Right-handed 310
Helix 91
AK1
A
2357 2372Right-handed alpha
Helix 92
AK2
A
2379 2389Right-handed alpha
Helix 93
AK3
A
2406 2417Right-handed alpha
Helix 94
AK4
A
2424 2431Right-handed alpha
Helix 95
AK5
A
2433 2440Right-handed alpha
Helix 96
AK6
A
2443 2447Right-handed 310
Helix 97
AK7
A
2459 2475Right-handed alpha
Helix 98
AK8
A
2478 2491Right-handed alpha
Helix 99
AK9
A
2504 2512Right-handed alpha
Helix 100
AL1
A
2529 2540Right-handed alpha
Helix 101
AL2
A
2553 2567Right-handed alpha
Helix 102
AL3
A
2580 2592Right-handed alpha
Helix 103
AL4
A
2613 2620Right-handed alpha
Helix 104
AL5
A
2629 2642Right-handed alpha
Helix 105
AL6
A
2652 2671Right-handed alpha
Helix 106
AL7
A
2672 2675Right-handed 310
Helix 107
AL8
A
2686 2705Right-handed alpha
Helix 108
AL9
A
2717 2723Right-handed alpha
Helix 109
AM1
A
2723 2728Right-handed alpha
Helix 110
AM2
A
2736 2751Right-handed alpha
Helix 111
AM3
A
2752 2756Right-handed 310
Helix 112
AM4
A
2779 2789Right-handed alpha
Helix 113
AM5
A
2795 2800Right-handed 310
Helix 114
AM6
A
2802 2805Right-handed 310
Helix 115
AM7
A
2806 2825Right-handed alpha
Helix 116
AM8
A
2854 2869Right-handed alpha
Helix 117
AM9
A
2885 2917Right-handed alpha
Helix 118
AN1
A
2923 2935Right-handed alpha
Helix 119
AN2
A
2952 2977Right-handed alpha
Helix 120
AN3
A
2994 3010Right-handed alpha
Helix 121
AN4
A
3109 3116Right-handed alpha
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There are 19 sheets in PDB entry 8FD6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 211first strand
Strand 2
A
217 223anti-parallel
Strand 3
A
228 236anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 391first strand
Strand 2
A
402 405anti-parallel
Strand 3
A
411 412anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 450first strand
Strand 2
A
581 585parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 476first strand
Strand 2
A
499 503parallel
Strand 3
A
558 562parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
543 545first strand
Strand 2
A
550 552anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
794 799first strand
Strand 2
A
843 849parallel
Strand 3
A
884 890parallel
Strand 4
A
764 768parallel
Strand 5
A
905 908parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
811 813first strand
Strand 2
A
820 822anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
869 871first strand
Strand 2
A
877 879anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1082 1084first strand
Strand 2
A
1090 1092anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1160 1166first strand
Strand 2
A
1203 1209parallel
Strand 3
A
1251 1257parallel
Strand 4
A
1136 1139parallel
Strand 5
A
1278 1280parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1186 1188first strand
Strand 2
A
1193 1196anti-parallel
Strand 3
A
1245 1248parallel
Strand 4
A
1236 1238anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1418 1419first strand
Strand 2
A
1427 1428anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1502 1505first strand
Strand 2
A
1535 1540parallel
Strand 3
A
1608 1613parallel
Strand 4
A
1477 1482parallel
Strand 5
A
1634 1640parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2088 2091first strand
Strand 2
A
2111 2114parallel
Strand 3
A
2155 2159parallel
Strand 4
A
2065 2068parallel
Strand 5
A
2175 2178parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2132 2134first strand
Strand 2
A
2137 2142anti-parallel
Strand 3
A
2145 2148anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2544 2548first strand
Strand 2
A
2571 2575parallel
Strand 3
A
2601 2607parallel
Strand 4
A
2519 2523parallel
Strand 5
A
2621 2625parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2761 2763first strand
Strand 2
A
2772 2773anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2987 2988first strand
Strand 2
A
3035 3039parallel
Strand 3
A
3066 3071anti-parallel
Strand 4
A
3018 3023anti-parallel
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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3052 3053first strand
Strand 2
A
3096 3104parallel
Strand 3
A
3082 3088anti-parallel
Strand 4
A
3120 3121parallel
Strand 5
A
3041 3043anti-parallel
Strand 6
A
3061 3063anti-parallel
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