Analysis of interatomic Contacts of Structural Units in PDB entry:
8FD7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FD7 entry

There are 3 chains in PDB entry 8FD7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	PHE 29	GLY 1078
K	PRO 112	ASP 1610
C	TYR 171	HIS 361

There are 96 helices in PDB entry 8FD7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	31	55	Right-handed alpha
Helix 2	AA2	D	55	67	Right-handed alpha
Helix 3	AA3	D	76	112	Right-handed alpha
Helix 4	AA4	D	178	189	Right-handed alpha
Helix 5	AA5	D	190	202	Right-handed alpha
Helix 6	AA6	D	239	242	Right-handed 310
Helix 7	AA7	D	243	251	Right-handed alpha
Helix 8	AA8	D	263	267	Right-handed 310
Helix 9	AA9	D	268	283	Right-handed alpha
Helix 10	AB1	D	313	325	Right-handed alpha
Helix 11	AB2	D	334	346	Right-handed alpha
Helix 12	AB3	D	371	379	Right-handed alpha
Helix 13	AB4	D	398	408	Right-handed alpha
Helix 14	AB5	D	417	421	Right-handed 310
Helix 15	AB6	D	427	432	Right-handed alpha
Helix 16	AB7	D	433	440	Right-handed alpha
Helix 17	AB8	D	441	444	Right-handed 310
Helix 18	AB9	D	481	484	Right-handed 310
Helix 19	AC1	D	496	501	Right-handed alpha
Helix 20	AC2	D	562	567	Right-handed alpha
Helix 21	AC3	D	570	582	Right-handed alpha
Helix 22	AC4	D	626	629	Right-handed 310
Helix 23	AC5	D	639	649	Right-handed alpha
Helix 24	AC6	D	650	653	Right-handed 310
Helix 25	AC7	D	654	659	Right-handed alpha
Helix 26	AC8	D	680	692	Right-handed alpha
Helix 27	AC9	D	700	721	Right-handed alpha
Helix 28	AD1	D	747	754	Right-handed 310
Helix 29	AD2	D	759	762	Right-handed 310
Helix 30	AD3	D	763	772	Right-handed alpha
Helix 31	AD4	D	819	829	Right-handed alpha
Helix 32	AD5	D	881	889	Right-handed alpha
Helix 33	AD6	D	1023	1026	Right-handed 310
Helix 34	AD7	D	1044	1049	Right-handed alpha
Helix 35	AD8	K	113	120	Right-handed alpha
Helix 36	AD9	K	123	144	Right-handed alpha
Helix 37	AE1	K	155	182	Right-handed alpha
Helix 38	AE2	K	188	211	Right-handed alpha
Helix 39	AE3	K	234	241	Right-handed 310
Helix 40	AE4	K	242	251	Right-handed alpha
Helix 41	AE5	K	254	266	Right-handed alpha
Helix 42	AE6	K	268	290	Right-handed alpha
Helix 43	AE7	K	349	361	Right-handed alpha
Helix 44	AE8	K	364	377	Right-handed alpha
Helix 45	AE9	K	380	413	Right-handed alpha
Helix 46	AF1	K	420	447	Right-handed alpha
Helix 47	AF2	K	525	542	Right-handed alpha
Helix 48	AF3	K	552	578	Right-handed alpha
Helix 49	AF4	K	579	585	Right-handed alpha
Helix 50	AF5	K	589	606	Right-handed alpha
Helix 51	AF6	K	607	609	Right-handed 310
Helix 52	AF7	K	613	631	Right-handed alpha
Helix 53	AF8	K	637	673	Right-handed alpha
Helix 54	AF9	K	691	705	Right-handed alpha
Helix 55	AG1	K	708	719	Right-handed alpha
Helix 56	AG2	K	723	728	Right-handed alpha
Helix 57	AG3	K	729	763	Right-handed alpha
Helix 58	AG4	K	890	898	Right-handed alpha
Helix 59	AG5	K	900	919	Right-handed alpha
Helix 60	AG6	K	928	951	Right-handed alpha
Helix 61	AG7	K	967	980	Right-handed alpha
Helix 62	AG8	K	996	1000	Right-handed 310
Helix 63	AG9	K	1002	1009	Right-handed alpha
Helix 64	AH1	K	1017	1030	Right-handed alpha
Helix 65	AH2	K	1030	1051	Right-handed alpha
Helix 66	AH3	K	1104	1113	Right-handed alpha
Helix 67	AH4	K	1116	1126	Right-handed alpha
Helix 68	AH5	K	1142	1171	Right-handed alpha
Helix 69	AH6	K	1183	1193	Right-handed alpha
Helix 70	AH7	K	1218	1236	Right-handed alpha
Helix 71	AH8	K	1237	1240	Right-handed 310
Helix 72	AH9	K	1244	1271	Right-handed alpha
Helix 73	AI1	K	1274	1279	Right-handed alpha
Helix 74	AI2	K	1281	1301	Right-handed alpha
Helix 75	AI3	K	1330	1335	Right-handed alpha
Helix 76	AI4	K	1337	1343	Right-handed alpha
Helix 77	AI5	K	1344	1355	Right-handed alpha
Helix 78	AI6	K	1359	1382	Right-handed alpha
Helix 79	AI7	K	1401	1415	Right-handed alpha
Helix 80	AI8	K	1417	1425	Right-handed alpha
Helix 81	AI9	K	1451	1483	Right-handed alpha
Helix 82	AJ1	K	1485	1490	Right-handed alpha
Helix 83	AJ2	K	1490	1504	Right-handed alpha
Helix 84	AJ3	K	1513	1518	Right-handed alpha
Helix 85	AJ4	K	1519	1523	Right-handed 310
Helix 86	AJ5	K	1539	1543	Right-handed 310
Helix 87	AJ6	K	1557	1570	Right-handed alpha
Helix 88	AJ7	K	1577	1591	Right-handed alpha
Helix 89	AJ8	K	1600	1609	Right-handed alpha
Helix 90	AJ9	C	190	208	Right-handed alpha
Helix 91	AK1	C	240	245	Right-handed alpha
Helix 92	AK2	C	246	263	Right-handed alpha
Helix 93	AK3	C	276	281	Right-handed 310
Helix 94	AK4	C	296	306	Right-handed alpha
Helix 95	AK5	C	311	327	Right-handed alpha
Helix 96	AK6	C	341	361	Right-handed alpha

There are 15 sheets in PDB entry 8FD7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	74	first strand
Strand 2	D	631	635	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	126	first strand
Strand 2	D	144	146	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	153	first strand
Strand 2	D	160	161	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	169	first strand
Strand 2	D	217	220	anti-parallel
Strand 3	D	208	212	anti-parallel
Strand 4	D	486	495	anti-parallel
Strand 5	D	460	469	anti-parallel
Strand 6	D	447	448	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	169	first strand
Strand 2	D	217	220	anti-parallel
Strand 3	D	208	212	anti-parallel
Strand 4	D	486	495	anti-parallel
Strand 5	D	460	469	anti-parallel
Strand 6	D	452	453	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	300	302	first strand
Strand 2	D	292	296	anti-parallel
Strand 3	D	257	261	parallel
Strand 4	D	359	364	parallel
Strand 5	D	385	391	parallel
Strand 6	D	411	415	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	523	525	first strand
Strand 2	D	513	517	anti-parallel
Strand 3	D	620	624	anti-parallel
Strand 4	D	602	613	anti-parallel
Strand 5	D	586	595	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	743	745	first strand
Strand 2	D	731	738	anti-parallel
Strand 3	D	809	818	anti-parallel
Strand 4	D	794	802	anti-parallel
Strand 5	D	776	778	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	861	863	first strand
Strand 2	D	850	856	anti-parallel
Strand 3	D	1015	1021	anti-parallel
Strand 4	D	1008	1009	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	895	906	first strand
Strand 2	D	974	984	anti-parallel
Strand 3	D	1038	1040	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	994	996	first strand
Strand 2	D	1003	1005	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1056	1058	first strand
Strand 2	K	1091	1093	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1072	1075	first strand
Strand 2	K	1085	1088	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	183	first strand
Strand 2	C	288	292	parallel
Strand 3	C	335	337	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	216	first strand
Strand 2	C	267	270	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FD7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FD7