Analysis of interatomic Contacts of Structural Units in PDB entry:
8FD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FD8 entry

There are 2 chains in PDB entry 8FD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 256
B
 MET 1TYR 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8FD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
38 51Right-handed alpha
Helix 3
AA3
A
54 56Right-handed 310
Helix 4
AA4
A
67 83Right-handed alpha
Helix 5
AA5
A
99 108Right-handed alpha
Helix 6
AA6
A
108 123Right-handed alpha
Helix 7
AA7
A
124 127Right-handed 310
Helix 8
AA8
A
138 142Right-handed 310
Helix 9
AA9
A
148 172Right-handed alpha
Helix 10
AB1
A
222 235Right-handed alpha
Helix 11
AB2
B
16 28Right-handed alpha
Helix 12
AB3
B
38 51Right-handed alpha
Helix 13
AB4
B
52 53Right-handed 310
Helix 14
AB5
B
54 56Right-handed 310
Helix 15
AB6
B
67 83Right-handed alpha
Helix 16
AB7
B
99 108Right-handed alpha
Helix 17
AB8
B
108 123Right-handed alpha
Helix 18
AB9
B
124 127Right-handed 310
Helix 19
AC1
B
138 142Right-handed 310
Helix 20
AC2
B
148 173Right-handed alpha
Helix 21
AC3
B
223 234Right-handed alpha
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There are 2 sheets in PDB entry 8FD8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
31 36parallel
Strand 3
A
7 11parallel
Strand 4
A
87 90parallel
Strand 5
A
132 136parallel
Strand 6
A
177 182parallel
Strand 7
A
242 246parallel
Strand 8
A
250 253anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 61first strand
Strand 2
B
31 35parallel
Strand 3
B
7 11parallel
Strand 4
B
87 90parallel
Strand 5
B
132 136parallel
Strand 6
B
178 181parallel
Strand 7
B
242 246parallel
Strand 8
B
250 253anti-parallel
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