Analysis of interatomic Contacts of Structural Units in PDB entry:
8FDA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FDA entry

There are 4 chains in PDB entry 8FDA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 28	GLN 503
B	SER 30	GLN 503
C	SER 30	ALA 504
D	LEU 31	GLN 503

There are 80 helices in PDB entry 8FDA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	56	Right-handed alpha
Helix 2	AA2	A	56	61	Right-handed alpha
Helix 3	AA3	A	78	87	Right-handed alpha
Helix 4	AA4	A	99	106	Right-handed alpha
Helix 5	AA5	A	118	132	Right-handed alpha
Helix 6	AA6	A	141	160	Right-handed alpha
Helix 7	AA7	A	167	185	Right-handed alpha
Helix 8	AA8	A	193	210	Right-handed alpha
Helix 9	AA9	A	219	224	Right-handed alpha
Helix 10	AB1	A	227	250	Right-handed alpha
Helix 11	AB2	A	261	273	Right-handed alpha
Helix 12	AB3	A	288	320	Right-handed alpha
Helix 13	AB4	A	321	336	Right-handed alpha
Helix 14	AB5	A	343	349	Right-handed 310
Helix 15	AB6	A	350	364	Right-handed alpha
Helix 16	AB7	A	395	402	Right-handed alpha
Helix 17	AB8	A	413	418	Right-handed 310
Helix 18	AB9	A	444	462	Right-handed alpha
Helix 19	AC1	A	496	502	Right-handed alpha
Helix 20	AC2	B	48	61	Right-handed alpha
Helix 21	AC3	B	78	87	Right-handed alpha
Helix 22	AC4	B	89	94	Right-handed 310
Helix 23	AC5	B	99	106	Right-handed alpha
Helix 24	AC6	B	118	131	Right-handed alpha
Helix 25	AC7	B	132	136	Right-handed 310
Helix 26	AC8	B	141	160	Right-handed alpha
Helix 27	AC9	B	167	185	Right-handed alpha
Helix 28	AD1	B	192	210	Right-handed alpha
Helix 29	AD2	B	219	224	Right-handed alpha
Helix 30	AD3	B	227	251	Right-handed alpha
Helix 31	AD4	B	261	273	Right-handed alpha
Helix 32	AD5	B	284	287	Right-handed 310
Helix 33	AD6	B	288	320	Right-handed alpha
Helix 34	AD7	B	321	336	Right-handed alpha
Helix 35	AD8	B	343	349	Right-handed 310
Helix 36	AD9	B	350	364	Right-handed alpha
Helix 37	AE1	B	395	402	Right-handed alpha
Helix 38	AE2	B	413	418	Right-handed 310
Helix 39	AE3	B	444	462	Right-handed alpha
Helix 40	AE4	B	496	502	Right-handed alpha
Helix 41	AE5	C	48	61	Right-handed alpha
Helix 42	AE6	C	78	87	Right-handed alpha
Helix 43	AE7	C	99	106	Right-handed alpha
Helix 44	AE8	C	118	132	Right-handed alpha
Helix 45	AE9	C	133	136	Right-handed 310
Helix 46	AF1	C	141	159	Right-handed alpha
Helix 47	AF2	C	167	185	Right-handed alpha
Helix 48	AF3	C	192	210	Right-handed alpha
Helix 49	AF4	C	227	251	Right-handed alpha
Helix 50	AF5	C	261	274	Right-handed alpha
Helix 51	AF6	C	284	287	Right-handed 310
Helix 52	AF7	C	288	319	Right-handed alpha
Helix 53	AF8	C	321	336	Right-handed alpha
Helix 54	AF9	C	343	349	Right-handed 310
Helix 55	AG1	C	350	364	Right-handed alpha
Helix 56	AG2	C	395	402	Right-handed alpha
Helix 57	AG3	C	413	418	Right-handed 310
Helix 58	AG4	C	444	462	Right-handed alpha
Helix 59	AG5	C	496	504	Right-handed alpha
Helix 60	AG6	D	48	61	Right-handed alpha
Helix 61	AG7	D	78	87	Right-handed alpha
Helix 62	AG8	D	90	94	Right-handed 310
Helix 63	AG9	D	99	106	Right-handed alpha
Helix 64	AH1	D	118	132	Right-handed alpha
Helix 65	AH2	D	133	136	Right-handed 310
Helix 66	AH3	D	141	159	Right-handed alpha
Helix 67	AH4	D	167	185	Right-handed alpha
Helix 68	AH5	D	192	210	Right-handed alpha
Helix 69	AH6	D	227	252	Right-handed alpha
Helix 70	AH7	D	261	274	Right-handed alpha
Helix 71	AH8	D	284	287	Right-handed 310
Helix 72	AH9	D	288	321	Right-handed alpha
Helix 73	AI1	D	321	337	Right-handed alpha
Helix 74	AI2	D	343	349	Right-handed 310
Helix 75	AI3	D	350	364	Right-handed alpha
Helix 76	AI4	D	395	401	Right-handed alpha
Helix 77	AI5	D	413	418	Right-handed 310
Helix 78	AI6	D	437	441	Right-handed 310
Helix 79	AI7	D	444	462	Right-handed alpha
Helix 80	AI8	D	496	502	Right-handed alpha

There are 16 sheets in PDB entry 8FDA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	C	63	68	parallel
Strand 3	C	71	76	anti-parallel
Strand 4	C	391	394	parallel
Strand 5	C	373	374	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	374	first strand
Strand 2	A	391	394	anti-parallel
Strand 3	A	71	76	parallel
Strand 4	A	63	68	anti-parallel
Strand 5	C	36	40	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	165	first strand
Strand 2	A	491	495	anti-parallel
Strand 3	A	463	466	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	381	first strand
Strand 2	A	384	386	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	480	first strand
Strand 2	A	484	485	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	40	first strand
Strand 2	D	63	68	parallel
Strand 3	D	71	76	anti-parallel
Strand 4	D	391	394	parallel
Strand 5	D	373	374	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	374	first strand
Strand 2	B	391	394	anti-parallel
Strand 3	B	71	76	parallel
Strand 4	B	63	68	anti-parallel
Strand 5	D	36	40	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	165	first strand
Strand 2	B	491	495	anti-parallel
Strand 3	B	463	466	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	381	first strand
Strand 2	B	384	386	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	480	first strand
Strand 2	B	484	485	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	165	first strand
Strand 2	C	491	495	anti-parallel
Strand 3	C	463	466	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	379	381	first strand
Strand 2	C	384	386	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	479	480	first strand
Strand 2	C	484	485	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	165	first strand
Strand 2	D	491	495	anti-parallel
Strand 3	D	463	466	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	379	381	first strand
Strand 2	D	384	386	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	479	480	first strand
Strand 2	D	484	485	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FDA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FDA