Analysis of interatomic Contacts of Structural Units in PDB entry:
8FDB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FDB entry

There are 3 chains in PDB entry 8FDB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LEU 333
B
 MET 1GLU 250
B
 LYS 252LEU 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 8FDB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 13Right-handed alpha
Helix 2
AA2
A
13 25Right-handed alpha
Helix 3
AA3
A
25 40Right-handed alpha
Helix 4
AA4
A
50 68Right-handed alpha
Helix 5
AA5
A
75 81Right-handed alpha
Helix 6
AA6
A
102 115Right-handed alpha
Helix 7
AA7
A
128 133Right-handed 310
Helix 8
AA8
A
151 170Right-handed alpha
Helix 9
AA9
A
171 191Right-handed alpha
Helix 10
AB1
A
196 201Right-handed alpha
Helix 11
AB2
A
212 230Right-handed alpha
Helix 12
AB3
A
246 251Right-handed alpha
Helix 13
AB4
A
264 278Right-handed alpha
Helix 14
AB5
A
296 316Right-handed alpha
Helix 15
AB6
B
5 40Right-handed alpha
Helix 16
AB7
B
50 68Right-handed alpha
Helix 17
AB8
B
76 81Right-handed alpha
Helix 18
AB9
B
102 115Right-handed alpha
Helix 19
AC1
B
128 133Right-handed 310
Helix 20
AC2
B
151 170Right-handed alpha
Helix 21
AC3
B
171 191Right-handed alpha
Helix 22
AC4
B
196 201Right-handed alpha
Helix 23
AC5
B
212 230Right-handed alpha
Helix 24
AC6
B
244 252Right-handed 310
Helix 25
AC7
B
264 278Right-handed alpha
Helix 26
AC8
B
296 316Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8FDB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 73first strand
Strand 2
A
44 47parallel
Strand 3
A
92 97parallel
Strand 4
A
118 123parallel
Strand 5
A
136 139parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 237first strand
Strand 2
A
205 210parallel
Strand 3
A
254 259parallel
Strand 4
A
281 286parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 73first strand
Strand 2
B
44 47parallel
Strand 3
B
92 97parallel
Strand 4
B
118 123parallel
Strand 5
B
136 139parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 237first strand
Strand 2
B
205 210parallel
Strand 3
B
254 259parallel
Strand 4
B
281 286parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il