Analysis of interatomic Contacts of Structural Units in PDB entry:
8FDG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FDG entry

There is 1 chain in PDB entry 8FDG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LYS 1505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8FDG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
105 109Right-handed 310
Helix 2
AA2
A
149 155Right-handed alpha
Helix 3
AA3
A
284 290Right-handed alpha
Helix 4
AA4
A
460 464Right-handed 310
Helix 5
AA5
A
482 489Right-handed alpha
Helix 6
AA6
A
530 539Right-handed alpha
Helix 7
AA7
A
549 554Right-handed alpha
Helix 8
AA8
A
760 764Right-handed 310
Helix 9
AA9
A
982 986Right-handed 310
Helix 10
AB1
A
1057 1062Right-handed alpha
Helix 11
AB2
A
1188 1190Right-handed 310
Helix 12
AB3
A
1203 1207Right-handed 310
Helix 13
AB4
A
1501 1505Right-handed 310
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There are 21 sheets in PDB entry 8FDG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
69 72parallel
Strand 3
A
122 125anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 40first strand
Strand 2
A
8 15anti-parallel
Strand 3
A
75 76parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 65first strand
Strand 2
A
160 165parallel
Strand 3
A
140 144anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 185first strand
Strand 2
A
224 229parallel
Strand 3
A
266 271anti-parallel
Strand 4
A
248 250anti-parallel
Strand 5
A
253 255anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 191first strand
Strand 2
A
202 206anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 219first strand
Strand 2
A
293 298parallel
Strand 3
A
276 282anti-parallel
Strand 4
A
238 243anti-parallel
Strand 5
A
257 261anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 370first strand
Strand 2
A
324 333anti-parallel
Strand 3
A
401 410parallel
Strand 4
A
452 459anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 397first strand
Strand 2
A
493 498parallel
Strand 3
A
472 478anti-parallel
Strand 4
A
418 419anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 515first strand
Strand 2
A
579 586parallel
Strand 3
A
519 524parallel
Strand 4
A
557 561anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 515first strand
Strand 2
A
579 586parallel
Strand 3
A
620 626anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 575first strand
Strand 2
A
648 654parallel
Strand 3
A
631 636anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 596first strand
Strand 2
A
613 615anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
883 891first strand
Strand 2
A
849 861anti-parallel
Strand 3
A
924 931parallel
Strand 4
A
973 980anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
917 920first strand
Strand 2
A
1017 1020parallel
Strand 3
A
994 997anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1036 1041first strand
Strand 2
A
1094 1101parallel
Strand 3
A
1137 1144anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1088 1089first strand
Strand 2
A
1166 1171parallel
Strand 3
A
1149 1154anti-parallel
Strand 4
A
1109 1113anti-parallel
Strand 5
A
1131 1133anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1119 1120first strand
Strand 2
A
1126 1127anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1178 1179first strand
Strand 2
A
1325 1331anti-parallel
Strand 3
A
1232 1247anti-parallel
Strand 4
A
1297 1318anti-parallel
Strand 5
A
1255 1267anti-parallel
Strand 6
A
1250 1252anti-parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1192 1193first strand
Strand 2
A
1232 1247anti-parallel
Strand 3
A
1297 1318anti-parallel
Strand 4
A
1255 1267anti-parallel
Strand 5
A
1274 1275anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1217 1218first strand
Strand 2
A
1322 1323anti-parallel
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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1434 1435first strand
Strand 2
A
1419 1427anti-parallel
Strand 3
A
1458 1477anti-parallel
Strand 4
A
1392 1406anti-parallel
Strand 5
A
1486 1490anti-parallel
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