Analysis of interatomic Contacts of Structural Units in PDB entry:
8FDT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FDT entry

There are 3 chains in PDB entry 8FDT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 88	THR 3123
B	ILE 96	ARG 411
C	ILE 96	ARG 411

There are122 helices in PDB entry 8FDT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	88	96	Right-handed alpha
Helix 2	AA2	A	100	105	Right-handed 310
Helix 3	AA3	A	107	114	Right-handed alpha
Helix 4	AA4	A	153	171	Right-handed alpha
Helix 5	AA5	A	172	176	Right-handed 310
Helix 6	AA6	A	178	188	Right-handed alpha
Helix 7	AA7	A	192	197	Right-handed 310
Helix 8	AA8	A	198	203	Right-handed alpha
Helix 9	AA9	A	242	274	Right-handed alpha
Helix 10	AB1	A	279	290	Right-handed alpha
Helix 11	AB2	A	291	315	Right-handed alpha
Helix 12	AB3	A	322	343	Right-handed alpha
Helix 13	AB4	A	346	374	Right-handed alpha
Helix 14	AB5	A	380	385	Right-handed alpha
Helix 15	AB6	A	427	443	Right-handed alpha
Helix 16	AB7	A	457	468	Right-handed alpha
Helix 17	AB8	A	482	497	Right-handed alpha
Helix 18	AB9	A	504	508	Right-handed 310
Helix 19	AC1	A	509	532	Right-handed alpha
Helix 20	AC2	A	574	579	Right-handed alpha
Helix 21	AC3	A	590	603	Right-handed alpha
Helix 22	AC4	A	606	625	Right-handed alpha
Helix 23	AC5	A	634	659	Right-handed alpha
Helix 24	AC6	A	677	690	Right-handed alpha
Helix 25	AC7	A	691	694	Right-handed 310
Helix 26	AC8	A	698	710	Right-handed alpha
Helix 27	AC9	A	720	734	Right-handed alpha
Helix 28	AD1	A	745	762	Right-handed alpha
Helix 29	AD2	A	774	790	Right-handed alpha
Helix 30	AD3	A	805	810	Right-handed alpha
Helix 31	AD4	A	823	834	Right-handed alpha
Helix 32	AD5	A	838	842	Right-handed 310
Helix 33	AD6	A	856	861	Right-handed 310
Helix 34	AD7	A	897	903	Right-handed alpha
Helix 35	AD8	A	915	928	Right-handed alpha
Helix 36	AD9	A	956	969	Right-handed alpha
Helix 37	AE1	A	970	973	Right-handed 310
Helix 38	AE2	A	976	988	Right-handed alpha
Helix 39	AE3	A	995	1021	Right-handed alpha
Helix 40	AE4	A	1027	1048	Right-handed alpha
Helix 41	AE5	A	1052	1066	Right-handed alpha
Helix 42	AE6	A	1078	1082	Right-handed 310
Helix 43	AE7	A	1116	1132	Right-handed alpha
Helix 44	AE8	A	1145	1157	Right-handed alpha
Helix 45	AE9	A	1172	1184	Right-handed alpha
Helix 46	AF1	A	1222	1234	Right-handed alpha
Helix 47	AF2	A	1269	1274	Right-handed alpha
Helix 48	AF3	A	1285	1301	Right-handed alpha
Helix 49	AF4	A	1302	1304	Right-handed 310
Helix 50	AF5	A	1307	1309	Right-handed 310
Helix 51	AF6	A	1310	1329	Right-handed alpha
Helix 52	AF7	A	1340	1355	Right-handed alpha
Helix 53	AF8	A	1362	1379	Right-handed alpha
Helix 54	AF9	A	1384	1403	Right-handed alpha
Helix 55	AG1	A	1407	1412	Right-handed alpha
Helix 56	AG2	A	1430	1449	Right-handed alpha
Helix 57	AG3	A	1457	1473	Right-handed alpha
Helix 58	AG4	A	1487	1499	Right-handed alpha
Helix 59	AG5	A	1513	1529	Right-handed alpha
Helix 60	AG6	A	1546	1560	Right-handed alpha
Helix 61	AG7	A	1568	1586	Right-handed alpha
Helix 62	AG8	A	1591	1606	Right-handed alpha
Helix 63	AG9	A	1618	1627	Right-handed alpha
Helix 64	AH1	A	1628	1633	Right-handed alpha
Helix 65	AH2	A	1643	1655	Right-handed alpha
Helix 66	AH3	A	1683	1709	Right-handed alpha
Helix 67	AH4	A	1717	1765	Right-handed alpha
Helix 68	AH5	A	1950	1980	Right-handed alpha
Helix 69	AH6	A	1980	1994	Right-handed alpha
Helix 70	AH7	A	1999	2017	Right-handed alpha
Helix 71	AH8	A	2026	2032	Right-handed alpha
Helix 72	AH9	A	2033	2043	Right-handed alpha
Helix 73	AI1	A	2048	2060	Right-handed alpha
Helix 74	AI2	A	2072	2082	Right-handed alpha
Helix 75	AI3	A	2083	2086	Right-handed 310
Helix 76	AI4	A	2096	2108	Right-handed alpha
Helix 77	AI5	A	2115	2119	Right-handed 310
Helix 78	AI6	A	2120	2122	Right-handed 310
Helix 79	AI7	A	2123	2129	Right-handed alpha
Helix 80	AI8	A	2167	2172	Right-handed alpha
Helix 81	AI9	A	2182	2199	Right-handed alpha
Helix 82	AJ1	A	2199	2234	Right-handed alpha
Helix 83	AJ2	A	2240	2268	Right-handed alpha
Helix 84	AJ3	A	2268	2296	Right-handed alpha
Helix 85	AJ4	A	2297	2299	Right-handed 310
Helix 86	AJ5	A	2306	2319	Right-handed alpha
Helix 87	AJ6	A	2329	2351	Right-handed alpha
Helix 88	AJ7	A	2357	2372	Right-handed alpha
Helix 89	AJ8	A	2379	2388	Right-handed alpha
Helix 90	AJ9	A	2406	2417	Right-handed alpha
Helix 91	AK1	A	2418	2423	Right-handed 310
Helix 92	AK2	A	2424	2431	Right-handed alpha
Helix 93	AK3	A	2433	2440	Right-handed alpha
Helix 94	AK4	A	2459	2475	Right-handed alpha
Helix 95	AK5	A	2478	2492	Right-handed alpha
Helix 96	AK6	A	2497	2501	Right-handed 310
Helix 97	AK7	A	2504	2512	Right-handed alpha
Helix 98	AK8	A	2529	2540	Right-handed alpha
Helix 99	AK9	A	2553	2566	Right-handed alpha
Helix 100	AL1	A	2580	2592	Right-handed alpha
Helix 101	AL2	A	2613	2620	Right-handed alpha
Helix 102	AL3	A	2629	2642	Right-handed alpha
Helix 103	AL4	A	2652	2672	Right-handed alpha
Helix 104	AL5	A	2673	2675	Right-handed 310
Helix 105	AL6	A	2686	2705	Right-handed alpha
Helix 106	AL7	A	2712	2716	Right-handed 310
Helix 107	AL8	A	2717	2728	Right-handed alpha
Helix 108	AL9	A	2730	2734	Right-handed 310
Helix 109	AM1	A	2736	2751	Right-handed alpha
Helix 110	AM2	A	2752	2757	Right-handed 310
Helix 111	AM3	A	2779	2789	Right-handed alpha
Helix 112	AM4	A	2795	2799	Right-handed 310
Helix 113	AM5	A	2806	2825	Right-handed alpha
Helix 114	AM6	A	2854	2869	Right-handed alpha
Helix 115	AM7	A	2885	2917	Right-handed alpha
Helix 116	AM8	A	2923	2935	Right-handed alpha
Helix 117	AM9	A	2952	2977	Right-handed alpha
Helix 118	AN1	A	2994	3010	Right-handed alpha
Helix 119	AN2	A	3109	3116	Right-handed alpha
Helix 120	AN3	B	287	299	Right-handed alpha
Helix 121	AN4	C	287	289	Right-handed 310
Helix 122	AN5	C	290	299	Right-handed alpha

There are 31 sheets in PDB entry 8FDT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	211	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	228	236	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	406	first strand
Strand 2	A	409	410	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	446	450	first strand
Strand 2	A	581	585	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	476	first strand
Strand 2	A	499	503	parallel
Strand 3	A	558	561	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	545	first strand
Strand 2	A	550	553	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	796	799	first strand
Strand 2	A	844	848	parallel
Strand 3	A	884	890	parallel
Strand 4	A	764	768	parallel
Strand 5	A	905	908	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	811	813	first strand
Strand 2	A	820	822	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	869	871	first strand
Strand 2	A	877	879	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1160	1166	first strand
Strand 2	A	1203	1209	parallel
Strand 3	A	1252	1257	parallel
Strand 4	A	1136	1139	parallel
Strand 5	A	1278	1280	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1193	1195	first strand
Strand 2	A	1245	1248	parallel
Strand 3	A	1236	1238	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1418	1419	first strand
Strand 2	A	1427	1428	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1504	1505	first strand
Strand 2	A	1536	1540	parallel
Strand 3	A	1608	1613	parallel
Strand 4	A	1478	1482	parallel
Strand 5	A	1635	1640	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2088	2091	first strand
Strand 2	A	2111	2114	parallel
Strand 3	A	2155	2159	parallel
Strand 4	A	2065	2068	parallel
Strand 5	A	2175	2178	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2132	2133	first strand
Strand 2	A	2138	2142	anti-parallel
Strand 3	A	2145	2149	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2544	2548	first strand
Strand 2	A	2571	2575	parallel
Strand 3	A	2602	2607	parallel
Strand 4	A	2519	2523	parallel
Strand 5	A	2621	2625	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2986	2988	first strand
Strand 2	A	3037	3039	parallel
Strand 3	A	3066	3071	anti-parallel
Strand 4	A	3018	3023	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3047	3048	first strand
Strand 2	A	3052	3054	anti-parallel
Strand 3	A	3096	3104	parallel
Strand 4	A	3082	3088	anti-parallel
Strand 5	A	3120	3121	parallel
Strand 6	A	3041	3043	anti-parallel
Strand 7	A	3061	3063	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	105	first strand
Strand 2	B	405	410	anti-parallel
Strand 3	B	395	400	anti-parallel
Strand 4	B	384	389	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	117	first strand
Strand 2	B	124	128	anti-parallel
Strand 3	B	133	137	anti-parallel
Strand 4	B	142	147	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	159	first strand
Strand 2	B	165	170	anti-parallel
Strand 3	B	174	179	anti-parallel
Strand 4	B	184	190	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	201	first strand
Strand 2	B	207	212	anti-parallel
Strand 3	B	216	221	anti-parallel
Strand 4	B	229	232	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	243	first strand
Strand 2	B	249	254	anti-parallel
Strand 3	B	259	263	anti-parallel
Strand 4	B	269	273	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	285	first strand
Strand 2	B	311	316	anti-parallel
Strand 3	B	320	325	anti-parallel
Strand 4	B	330	336	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	347	first strand
Strand 2	B	354	358	anti-parallel
Strand 3	B	363	366	anti-parallel
Strand 4	B	374	377	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	105	first strand
Strand 2	C	405	410	anti-parallel
Strand 3	C	395	398	anti-parallel
Strand 4	C	387	389	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	117	first strand
Strand 2	C	124	128	anti-parallel
Strand 3	C	133	137	anti-parallel
Strand 4	C	142	145	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	159	first strand
Strand 2	C	165	170	anti-parallel
Strand 3	C	175	179	anti-parallel
Strand 4	C	184	189	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	201	first strand
Strand 2	C	207	212	anti-parallel
Strand 3	C	216	221	anti-parallel
Strand 4	C	227	232	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	243	first strand
Strand 2	C	249	254	anti-parallel
Strand 3	C	259	263	anti-parallel
Strand 4	C	269	273	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	285	first strand
Strand 2	C	311	316	anti-parallel
Strand 3	C	320	325	anti-parallel
Strand 4	C	330	336	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	347	first strand
Strand 2	C	354	358	anti-parallel
Strand 3	C	363	366	anti-parallel
Strand 4	C	374	377	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FDT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FDT