Analysis of interatomic Contacts of Structural Units in PDB entry:
8FDU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FDU entry

There are 3 chains in PDB entry 8FDU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1095	GLN 2278
B	ILE 96	ARG 411
C	ILE 96	ARG 411

There are 45 helices in PDB entry 8FDU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1116	1132	Right-handed alpha
Helix 2	AA2	A	1145	1157	Right-handed alpha
Helix 3	AA3	A	1172	1184	Right-handed alpha
Helix 4	AA4	A	1222	1234	Right-handed alpha
Helix 5	AA5	A	1269	1274	Right-handed alpha
Helix 6	AA6	A	1285	1301	Right-handed alpha
Helix 7	AA7	A	1302	1304	Right-handed 310
Helix 8	AA8	A	1307	1309	Right-handed 310
Helix 9	AA9	A	1310	1329	Right-handed alpha
Helix 10	AB1	A	1340	1355	Right-handed alpha
Helix 11	AB2	A	1362	1379	Right-handed alpha
Helix 12	AB3	A	1384	1403	Right-handed alpha
Helix 13	AB4	A	1407	1412	Right-handed alpha
Helix 14	AB5	A	1430	1449	Right-handed alpha
Helix 15	AB6	A	1457	1473	Right-handed alpha
Helix 16	AB7	A	1487	1499	Right-handed alpha
Helix 17	AB8	A	1513	1529	Right-handed alpha
Helix 18	AB9	A	1546	1560	Right-handed alpha
Helix 19	AC1	A	1568	1586	Right-handed alpha
Helix 20	AC2	A	1591	1606	Right-handed alpha
Helix 21	AC3	A	1618	1627	Right-handed alpha
Helix 22	AC4	A	1628	1633	Right-handed alpha
Helix 23	AC5	A	1643	1655	Right-handed alpha
Helix 24	AC6	A	1683	1709	Right-handed alpha
Helix 25	AC7	A	1717	1765	Right-handed alpha
Helix 26	AC8	A	1950	1980	Right-handed alpha
Helix 27	AC9	A	1980	1994	Right-handed alpha
Helix 28	AD1	A	1999	2017	Right-handed alpha
Helix 29	AD2	A	2026	2032	Right-handed alpha
Helix 30	AD3	A	2033	2043	Right-handed alpha
Helix 31	AD4	A	2048	2060	Right-handed alpha
Helix 32	AD5	A	2072	2082	Right-handed alpha
Helix 33	AD6	A	2083	2086	Right-handed 310
Helix 34	AD7	A	2096	2108	Right-handed alpha
Helix 35	AD8	A	2115	2119	Right-handed 310
Helix 36	AD9	A	2120	2122	Right-handed 310
Helix 37	AE1	A	2123	2129	Right-handed alpha
Helix 38	AE2	A	2167	2172	Right-handed alpha
Helix 39	AE3	A	2182	2199	Right-handed alpha
Helix 40	AE4	A	2199	2234	Right-handed alpha
Helix 41	AE5	A	2240	2268	Right-handed alpha
Helix 42	AE6	A	2268	2278	Right-handed alpha
Helix 43	AE7	B	287	299	Right-handed alpha
Helix 44	AE8	C	287	289	Right-handed 310
Helix 45	AE9	C	290	299	Right-handed alpha

There are 20 sheets in PDB entry 8FDU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1160	1166	first strand
Strand 2	A	1203	1209	parallel
Strand 3	A	1252	1257	parallel
Strand 4	A	1136	1139	parallel
Strand 5	A	1278	1280	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1193	1195	first strand
Strand 2	A	1245	1248	parallel
Strand 3	A	1236	1238	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1418	1419	first strand
Strand 2	A	1427	1428	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1504	1505	first strand
Strand 2	A	1536	1540	parallel
Strand 3	A	1608	1613	parallel
Strand 4	A	1478	1482	parallel
Strand 5	A	1635	1640	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2088	2091	first strand
Strand 2	A	2111	2114	parallel
Strand 3	A	2155	2159	parallel
Strand 4	A	2065	2068	parallel
Strand 5	A	2175	2178	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2132	2133	first strand
Strand 2	A	2138	2142	anti-parallel
Strand 3	A	2145	2149	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	105	first strand
Strand 2	B	405	410	anti-parallel
Strand 3	B	395	400	anti-parallel
Strand 4	B	384	389	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	117	first strand
Strand 2	B	124	128	anti-parallel
Strand 3	B	133	137	anti-parallel
Strand 4	B	142	147	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	159	first strand
Strand 2	B	165	170	anti-parallel
Strand 3	B	174	179	anti-parallel
Strand 4	B	185	190	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	201	first strand
Strand 2	B	207	212	anti-parallel
Strand 3	B	216	221	anti-parallel
Strand 4	B	229	232	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	243	first strand
Strand 2	B	249	254	anti-parallel
Strand 3	B	259	263	anti-parallel
Strand 4	B	269	273	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	285	first strand
Strand 2	B	311	316	anti-parallel
Strand 3	B	320	325	anti-parallel
Strand 4	B	330	336	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	347	first strand
Strand 2	B	354	358	anti-parallel
Strand 3	B	363	366	anti-parallel
Strand 4	B	374	377	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	106	first strand
Strand 2	C	404	410	anti-parallel
Strand 3	C	395	398	anti-parallel
Strand 4	C	387	389	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	117	first strand
Strand 2	C	124	128	anti-parallel
Strand 3	C	133	137	anti-parallel
Strand 4	C	142	145	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	159	first strand
Strand 2	C	165	170	anti-parallel
Strand 3	C	175	179	anti-parallel
Strand 4	C	184	189	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	201	first strand
Strand 2	C	207	212	anti-parallel
Strand 3	C	216	221	anti-parallel
Strand 4	C	227	232	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	243	first strand
Strand 2	C	249	254	anti-parallel
Strand 3	C	259	263	anti-parallel
Strand 4	C	269	273	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	285	first strand
Strand 2	C	311	316	anti-parallel
Strand 3	C	320	325	anti-parallel
Strand 4	C	330	336	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	347	first strand
Strand 2	C	354	358	anti-parallel
Strand 3	C	363	366	anti-parallel
Strand 4	C	374	377	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FDU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FDU