Analysis of interatomic Contacts of Structural Units in PDB entry:
8FDW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FDW entry

There are 3 chains in PDB entry 8FDW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	TYR 695	SER 1249
A	TYR 695	SER 1249
C	TYR 695	SER 1249

There are 44 helices in PDB entry 8FDW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	737	743	Right-handed alpha
Helix 2	AA2	B	746	756	Right-handed alpha
Helix 3	AA3	B	758	768	Right-handed alpha
Helix 4	AA4	B	833	842	Right-handed alpha
Helix 5	AA5	B	844	849	Right-handed 310
Helix 6	AA6	B	866	887	Right-handed alpha
Helix 7	AA7	B	890	894	Right-handed 310
Helix 8	AA8	B	895	1031	Right-handed alpha
Helix 9	AA9	B	1116	1118	Right-handed 310
Helix 10	AB1	B	1147	1153	Right-handed alpha
Helix 11	AB2	B	1168	1172	Right-handed 310
Helix 12	AB3	B	1179	1193	Right-handed alpha
Helix 13	AB4	B	1218	1234	Right-handed alpha
Helix 14	AB5	B	1237	1249	Right-handed alpha
Helix 15	AB6	A	737	743	Right-handed alpha
Helix 16	AB7	A	746	757	Right-handed alpha
Helix 17	AB8	A	758	768	Right-handed alpha
Helix 18	AB9	A	833	842	Right-handed alpha
Helix 19	AC1	A	866	887	Right-handed alpha
Helix 20	AC2	A	890	894	Right-handed 310
Helix 21	AC3	A	895	1031	Right-handed alpha
Helix 22	AC4	A	1116	1118	Right-handed 310
Helix 23	AC5	A	1147	1153	Right-handed alpha
Helix 24	AC6	A	1168	1172	Right-handed 310
Helix 25	AC7	A	1179	1193	Right-handed alpha
Helix 26	AC8	A	1194	1197	Right-handed 310
Helix 27	AC9	A	1218	1234	Right-handed alpha
Helix 28	AD1	A	1237	1249	Right-handed alpha
Helix 29	AD2	C	704	708	Right-handed 310
Helix 30	AD3	C	737	743	Right-handed alpha
Helix 31	AD4	C	746	757	Right-handed alpha
Helix 32	AD5	C	758	768	Right-handed alpha
Helix 33	AD6	C	833	842	Right-handed alpha
Helix 34	AD7	C	844	849	Right-handed 310
Helix 35	AD8	C	866	887	Right-handed alpha
Helix 36	AD9	C	890	894	Right-handed 310
Helix 37	AE1	C	895	1031	Right-handed alpha
Helix 38	AE2	C	1116	1118	Right-handed 310
Helix 39	AE3	C	1147	1153	Right-handed alpha
Helix 40	AE4	C	1168	1172	Right-handed 310
Helix 41	AE5	C	1179	1193	Right-handed alpha
Helix 42	AE6	C	1194	1197	Right-handed 310
Helix 43	AE7	C	1218	1234	Right-handed alpha
Helix 44	AE8	C	1237	1249	Right-handed alpha

There are 13 sheets in PDB entry 8FDW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1047	1050	first strand
Strand 2	B	1059	1077	anti-parallel
Strand 3	B	1053	1056	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1047	1050	first strand
Strand 2	B	1059	1077	anti-parallel
Strand 3	B	710	728	anti-parallel
Strand 4	C	1129	1134	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	853	855	first strand
Strand 2	B	858	860	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1081	1083	first strand
Strand 2	B	1086	1090	anti-parallel
Strand 3	B	1120	1122	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1094	1098	first strand
Strand 2	B	1101	1106	anti-parallel
Strand 3	B	1109	1113	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1129	1134	first strand
Strand 2	A	710	727	parallel
Strand 3	A	1059	1078	anti-parallel
Strand 4	A	1053	1056	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1047	1050	first strand
Strand 2	A	1059	1078	anti-parallel
Strand 3	A	1094	1098	anti-parallel
Strand 4	A	1101	1106	anti-parallel
Strand 5	A	1109	1113	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	853	855	first strand
Strand 2	A	858	860	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1081	1083	first strand
Strand 2	A	1086	1090	anti-parallel
Strand 3	A	1120	1122	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1129	1134	first strand
Strand 2	C	710	728	parallel
Strand 3	C	1059	1078	anti-parallel
Strand 4	C	1053	1056	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1047	1048	first strand
Strand 2	C	1059	1078	anti-parallel
Strand 3	C	1094	1098	anti-parallel
Strand 4	C	1101	1106	anti-parallel
Strand 5	C	1109	1113	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	853	855	first strand
Strand 2	C	858	860	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1081	1083	first strand
Strand 2	C	1086	1090	anti-parallel
Strand 3	C	1120	1122	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FDW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FDW