Analysis of interatomic Contacts of Structural Units in PDB entry:
8FE1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FE1 entry

There are 5 chains in PDB entry 8FE1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 33	GLN 444
D	PRO 31	GLN 444
C	PRO 31	GLN 444
B	PRO 31	GLN 444
E	PRO 40	LEU 494

There are 43 helices in PDB entry 8FE1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	42	Right-handed alpha
Helix 2	AA2	A	110	116	Right-handed 310
Helix 3	AA3	A	244	251	Right-handed alpha
Helix 4	AA4	A	251	264	Right-handed alpha
Helix 5	AA5	A	265	267	Right-handed 310
Helix 6	AA6	A	272	295	Right-handed alpha
Helix 7	AA7	A	305	334	Right-handed alpha
Helix 8	AA8	A	396	444	Right-handed alpha
Helix 9	AA9	D	33	41	Right-handed alpha
Helix 10	AB1	D	95	98	Right-handed 310
Helix 11	AB2	D	110	117	Right-handed 310
Helix 12	AB3	D	244	251	Right-handed alpha
Helix 13	AB4	D	251	264	Right-handed alpha
Helix 14	AB5	D	265	268	Right-handed 310
Helix 15	AB6	D	272	295	Right-handed alpha
Helix 16	AB7	D	305	334	Right-handed alpha
Helix 17	AB8	D	397	444	Right-handed alpha
Helix 18	AB9	C	33	41	Right-handed alpha
Helix 19	AC1	C	110	117	Right-handed 310
Helix 20	AC2	C	244	251	Right-handed alpha
Helix 21	AC3	C	251	264	Right-handed alpha
Helix 22	AC4	C	265	267	Right-handed 310
Helix 23	AC5	C	272	296	Right-handed alpha
Helix 24	AC6	C	305	334	Right-handed alpha
Helix 25	AC7	C	397	444	Right-handed alpha
Helix 26	AC8	B	33	41	Right-handed alpha
Helix 27	AC9	B	110	117	Right-handed 310
Helix 28	AD1	B	244	251	Right-handed alpha
Helix 29	AD2	B	251	264	Right-handed alpha
Helix 30	AD3	B	265	268	Right-handed 310
Helix 31	AD4	B	272	295	Right-handed alpha
Helix 32	AD5	B	296	298	Right-handed 310
Helix 33	AD6	B	305	338	Right-handed alpha
Helix 34	AD7	B	399	443	Right-handed alpha
Helix 35	AD8	E	58	64	Right-handed alpha
Helix 36	AD9	E	130	137	Right-handed 310
Helix 37	AE1	E	188	191	Right-handed 310
Helix 38	AE2	E	265	272	Right-handed alpha
Helix 39	AE3	E	272	285	Right-handed alpha
Helix 40	AE4	E	286	288	Right-handed 310
Helix 41	AE5	E	293	319	Right-handed alpha
Helix 42	AE6	E	326	355	Right-handed alpha
Helix 43	AE7	E	467	493	Right-handed alpha

There are 23 sheets in PDB entry 8FE1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	140	144	anti-parallel
Strand 3	A	149	161	anti-parallel
Strand 4	A	81	93	anti-parallel
Strand 5	A	61	76	anti-parallel
Strand 6	A	190	194	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	131	first strand
Strand 2	A	149	161	anti-parallel
Strand 3	A	81	93	anti-parallel
Strand 4	A	61	76	anti-parallel
Strand 5	A	200	202	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	124	first strand
Strand 2	A	173	182	anti-parallel
Strand 3	A	233	242	anti-parallel
Strand 4	A	211	221	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	225	first strand
Strand 2	A	230	231	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	108	first strand
Strand 2	D	140	144	anti-parallel
Strand 3	D	149	161	anti-parallel
Strand 4	D	81	93	anti-parallel
Strand 5	D	61	76	anti-parallel
Strand 6	D	190	194	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	131	first strand
Strand 2	D	149	161	anti-parallel
Strand 3	D	81	93	anti-parallel
Strand 4	D	61	76	anti-parallel
Strand 5	D	200	202	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	124	first strand
Strand 2	D	173	182	anti-parallel
Strand 3	D	233	242	anti-parallel
Strand 4	D	211	213	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	124	first strand
Strand 2	D	173	182	anti-parallel
Strand 3	D	233	242	anti-parallel
Strand 4	D	218	221	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	225	first strand
Strand 2	D	230	231	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	109	first strand
Strand 2	C	140	145	anti-parallel
Strand 3	C	149	161	anti-parallel
Strand 4	C	81	93	anti-parallel
Strand 5	C	61	76	anti-parallel
Strand 6	C	190	194	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	131	first strand
Strand 2	C	149	161	anti-parallel
Strand 3	C	81	93	anti-parallel
Strand 4	C	61	76	anti-parallel
Strand 5	C	200	202	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	124	first strand
Strand 2	C	173	181	anti-parallel
Strand 3	C	233	242	anti-parallel
Strand 4	C	211	213	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	124	first strand
Strand 2	C	173	181	anti-parallel
Strand 3	C	233	242	anti-parallel
Strand 4	C	218	221	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	225	first strand
Strand 2	C	230	231	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	109	first strand
Strand 2	B	140	145	anti-parallel
Strand 3	B	149	161	anti-parallel
Strand 4	B	81	93	anti-parallel
Strand 5	B	61	76	anti-parallel
Strand 6	B	190	194	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	132	first strand
Strand 2	B	149	161	anti-parallel
Strand 3	B	81	93	anti-parallel
Strand 4	B	61	76	anti-parallel
Strand 5	B	200	202	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	124	first strand
Strand 2	B	173	182	anti-parallel
Strand 3	B	233	242	anti-parallel
Strand 4	B	211	213	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	124	first strand
Strand 2	B	173	182	anti-parallel
Strand 3	B	233	242	anti-parallel
Strand 4	B	218	221	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	226	first strand
Strand 2	B	229	231	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	151	first strand
Strand 2	E	169	181	anti-parallel
Strand 3	E	100	112	anti-parallel
Strand 4	E	80	95	anti-parallel
Strand 5	E	210	214	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	160	164	first strand
Strand 2	E	169	181	anti-parallel
Strand 3	E	100	112	anti-parallel
Strand 4	E	80	95	anti-parallel
Strand 5	E	220	221	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	144	first strand
Strand 2	E	193	202	anti-parallel
Strand 3	E	254	263	anti-parallel
Strand 4	E	230	232	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	244	246	first strand
Strand 2	E	250	252	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FE1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FE1