Analysis of interatomic Contacts of Structural Units in PDB entry:
8FE4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FE4 entry

There are 12 chains in PDB entry 8FE4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 394
B	PHE 1	THR 81
H	ALA 1	ILE 221
L	ALA 1	CYS 213
C	MET 1	LYS 394
D	PHE 1	THR 81
M	ALA 1	ILE 221
N	ALA 1	CYS 213
E	MET 1	LYS 394
F	PHE 1	THR 81
O	ALA 1	ILE 221
P	ALA 1	CYS 213

There are 42 helices in PDB entry 8FE4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	87	Right-handed 310
Helix 2	AA2	A	100	104	Right-handed 310
Helix 3	AA3	A	233	236	Right-handed 310
Helix 4	AA4	A	256	265	Right-handed alpha
Helix 5	AA5	B	15	19	Right-handed 310
Helix 6	AA6	H	28	32	Right-handed 310
Helix 7	AA7	H	61	65	Right-handed 310
Helix 8	AA8	H	74	77	Right-handed 310
Helix 9	AA9	H	87	90	Right-handed 310
Helix 10	AB1	H	161	163	Right-handed 310
Helix 11	AB2	H	205	208	Right-handed 310
Helix 12	AB3	L	78	82	Right-handed 310
Helix 13	AB4	L	122	126	Right-handed 310
Helix 14	AB5	L	182	186	Right-handed alpha
Helix 15	AB6	C	82	87	Right-handed 310
Helix 16	AB7	C	100	104	Right-handed 310
Helix 17	AB8	C	233	236	Right-handed 310
Helix 18	AB9	C	256	265	Right-handed alpha
Helix 19	AC1	D	15	19	Right-handed 310
Helix 20	AC2	M	28	32	Right-handed 310
Helix 21	AC3	M	61	65	Right-handed 310
Helix 22	AC4	M	74	77	Right-handed 310
Helix 23	AC5	M	87	90	Right-handed 310
Helix 24	AC6	M	161	163	Right-handed 310
Helix 25	AC7	M	205	208	Right-handed 310
Helix 26	AC8	N	78	82	Right-handed 310
Helix 27	AC9	N	122	126	Right-handed 310
Helix 28	AD1	N	182	186	Right-handed alpha
Helix 29	AD2	E	82	87	Right-handed 310
Helix 30	AD3	E	100	104	Right-handed 310
Helix 31	AD4	E	233	236	Right-handed 310
Helix 32	AD5	E	256	265	Right-handed alpha
Helix 33	AD6	F	15	19	Right-handed 310
Helix 34	AD7	O	28	32	Right-handed 310
Helix 35	AD8	O	61	65	Right-handed 310
Helix 36	AD9	O	74	77	Right-handed 310
Helix 37	AE1	O	87	90	Right-handed 310
Helix 38	AE2	O	161	163	Right-handed 310
Helix 39	AE3	O	205	208	Right-handed 310
Helix 40	AE4	P	78	82	Right-handed 310
Helix 41	AE5	P	122	126	Right-handed 310
Helix 42	AE6	P	182	186	Right-handed alpha

There are 60 sheets in PDB entry 8FE4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	30	35	parallel
Strand 3	A	38	50	anti-parallel
Strand 4	A	135	143	anti-parallel
Strand 5	A	160	164	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	30	35	parallel
Strand 3	A	38	50	anti-parallel
Strand 4	A	276	278	anti-parallel
Strand 5	A	272	273	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	26	first strand
Strand 2	A	282	288	anti-parallel
Strand 3	A	179	186	anti-parallel
Strand 4	A	171	175	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	99	first strand
Strand 2	A	109	129	anti-parallel
Strand 3	A	54	72	anti-parallel
Strand 4	A	196	200	first strand
Strand 5	A	205	209	anti-parallel
Strand 6	A	269	270	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	222	first strand
Strand 2	A	54	72	anti-parallel
Strand 3	A	109	129	anti-parallel
Strand 4	B	43	53	first strand
Strand 5	B	73	80	anti-parallel
Strand 6	B	9	13	parallel
Strand 7	B	2	6	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	240	first strand
Strand 2	A	250	252	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	314	first strand
Strand 2	A	320	322	anti-parallel
Strand 3	A	367	370	anti-parallel
Strand 4	A	350	351	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	374	380	anti-parallel
Strand 3	A	387	393	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	27	first strand
Strand 2	B	30	36	anti-parallel
Strand 3	B	66	68	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	4	first strand
Strand 2	H	24	25	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	50	first strand
Strand 2	H	34	40	anti-parallel
Strand 3	H	92	93	anti-parallel
Strand 4	H	113	114	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	68	73	first strand
Strand 2	H	78	83	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	140	150	anti-parallel
Strand 3	H	179	189	anti-parallel
Strand 4	H	168	170	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	140	150	anti-parallel
Strand 3	H	179	189	anti-parallel
Strand 4	H	174	176	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	159	first strand
Strand 2	H	199	204	anti-parallel
Strand 3	H	209	214	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	13	first strand
Strand 2	L	101	105	parallel
Strand 3	L	83	89	anti-parallel
Strand 4	L	34	37	anti-parallel
Strand 5	L	43	48	anti-parallel
Strand 6	L	52	53	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	13	first strand
Strand 2	L	101	105	parallel
Strand 3	L	83	89	anti-parallel
Strand 4	L	96	97	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	22	first strand
Strand 2	L	69	74	anti-parallel
Strand 3	L	61	66	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	113	117	first strand
Strand 2	L	128	138	anti-parallel
Strand 3	L	172	181	anti-parallel
Strand 4	L	158	162	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	152	154	first strand
Strand 2	L	144	149	anti-parallel
Strand 3	L	190	196	anti-parallel
Strand 4	L	204	209	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	30	35	parallel
Strand 3	C	38	50	anti-parallel
Strand 4	C	135	143	anti-parallel
Strand 5	C	160	164	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	30	35	parallel
Strand 3	C	38	50	anti-parallel
Strand 4	C	276	278	anti-parallel
Strand 5	C	272	273	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	26	first strand
Strand 2	C	282	288	anti-parallel
Strand 3	C	179	186	anti-parallel
Strand 4	C	171	175	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	99	first strand
Strand 2	C	109	129	anti-parallel
Strand 3	C	54	72	anti-parallel
Strand 4	C	196	200	first strand
Strand 5	C	205	209	anti-parallel
Strand 6	C	269	270	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	222	first strand
Strand 2	C	54	72	anti-parallel
Strand 3	C	109	129	anti-parallel
Strand 4	D	43	53	first strand
Strand 5	D	73	80	anti-parallel
Strand 6	D	9	13	parallel
Strand 7	D	2	6	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	240	first strand
Strand 2	C	250	252	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	314	first strand
Strand 2	C	320	322	anti-parallel
Strand 3	C	367	370	anti-parallel
Strand 4	C	350	351	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	340	first strand
Strand 2	C	374	380	anti-parallel
Strand 3	C	387	393	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	27	first strand
Strand 2	D	30	36	anti-parallel
Strand 3	D	66	68	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	4	first strand
Strand 2	M	24	25	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	45	50	first strand
Strand 2	M	34	40	anti-parallel
Strand 3	M	92	93	anti-parallel
Strand 4	M	113	114	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	68	73	first strand
Strand 2	M	78	83	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	125	129	first strand
Strand 2	M	140	150	anti-parallel
Strand 3	M	179	189	anti-parallel
Strand 4	M	168	170	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	125	129	first strand
Strand 2	M	140	150	anti-parallel
Strand 3	M	179	189	anti-parallel
Strand 4	M	174	176	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	156	159	first strand
Strand 2	M	199	204	anti-parallel
Strand 3	M	209	214	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	12	13	first strand
Strand 2	N	101	105	parallel
Strand 3	N	83	89	anti-parallel
Strand 4	N	34	37	anti-parallel
Strand 5	N	43	48	anti-parallel
Strand 6	N	52	53	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	12	13	first strand
Strand 2	N	101	105	parallel
Strand 3	N	83	89	anti-parallel
Strand 4	N	96	97	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	19	22	first strand
Strand 2	N	69	74	anti-parallel
Strand 3	N	61	66	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	113	117	first strand
Strand 2	N	128	138	anti-parallel
Strand 3	N	172	181	anti-parallel
Strand 4	N	158	162	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	152	154	first strand
Strand 2	N	144	149	anti-parallel
Strand 3	N	190	196	anti-parallel
Strand 4	N	204	209	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	30	35	parallel
Strand 3	E	38	50	anti-parallel
Strand 4	E	135	143	anti-parallel
Strand 5	E	160	164	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	30	35	parallel
Strand 3	E	38	50	anti-parallel
Strand 4	E	276	278	anti-parallel
Strand 5	E	272	273	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	26	first strand
Strand 2	E	282	288	anti-parallel
Strand 3	E	179	186	anti-parallel
Strand 4	E	171	175	anti-parallel

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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	99	first strand
Strand 2	E	109	129	anti-parallel
Strand 3	E	54	72	anti-parallel
Strand 4	E	196	200	first strand
Strand 5	E	205	209	anti-parallel
Strand 6	E	269	270	anti-parallel

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There are 7 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	220	222	first strand
Strand 2	E	54	72	anti-parallel
Strand 3	E	109	129	anti-parallel
Strand 4	F	43	53	first strand
Strand 5	F	73	80	anti-parallel
Strand 6	F	9	13	parallel
Strand 7	F	2	6	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	240	first strand
Strand 2	E	250	252	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	313	314	first strand
Strand 2	E	320	322	anti-parallel
Strand 3	E	367	370	anti-parallel
Strand 4	E	350	351	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	339	340	first strand
Strand 2	E	374	380	anti-parallel
Strand 3	E	387	393	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	27	first strand
Strand 2	F	30	36	anti-parallel
Strand 3	F	66	68	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	3	4	first strand
Strand 2	O	24	25	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	45	50	first strand
Strand 2	O	34	40	anti-parallel
Strand 3	O	92	93	anti-parallel
Strand 4	O	113	114	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	68	73	first strand
Strand 2	O	78	83	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	125	129	first strand
Strand 2	O	140	150	anti-parallel
Strand 3	O	179	189	anti-parallel
Strand 4	O	168	170	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	125	129	first strand
Strand 2	O	140	150	anti-parallel
Strand 3	O	179	189	anti-parallel
Strand 4	O	174	176	anti-parallel

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There are 3 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	156	159	first strand
Strand 2	O	199	204	anti-parallel
Strand 3	O	209	214	anti-parallel

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There are 6 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	12	13	first strand
Strand 2	P	101	105	parallel
Strand 3	P	83	89	anti-parallel
Strand 4	P	34	37	anti-parallel
Strand 5	P	43	48	anti-parallel
Strand 6	P	52	53	anti-parallel

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There are 4 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	12	13	first strand
Strand 2	P	101	105	parallel
Strand 3	P	83	89	anti-parallel
Strand 4	P	96	97	anti-parallel

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There are 3 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	19	22	first strand
Strand 2	P	69	74	anti-parallel
Strand 3	P	61	66	anti-parallel

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There are 4 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	113	117	first strand
Strand 2	P	128	138	anti-parallel
Strand 3	P	172	181	anti-parallel
Strand 4	P	158	162	anti-parallel

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There are 4 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	152	154	first strand
Strand 2	P	144	149	anti-parallel
Strand 3	P	190	196	anti-parallel
Strand 4	P	204	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FE4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FE4