Analysis of interatomic Contacts of Structural Units in PDB entry:
8FEC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FEC entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 9 chains in PDB entry 8FEC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2PHE 193
A
 GLU 195TRP 251
A
 LEU 253VAL 392
A
 ILE 394PHE 405
I
 THR 5ASP 24
B
 LYS 2TRP 251
B
 LEU 253VAL 392
B
 ILE 394PHE 405
J
 THR 5ASP 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8FEC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed alpha
Helix 2
AA2
A
15 30Right-handed alpha
Helix 3
AA3
A
40 56Right-handed alpha
Helix 4
AA4
A
56 64Right-handed alpha
Helix 5
AA5
A
64 87Right-handed alpha
Helix 6
AA6
A
94 96Right-handed 310
Helix 7
AA7
A
131 137Right-handed alpha
Helix 8
AA8
A
139 153Right-handed alpha
Helix 9
AA9
A
182 190Right-handed alpha
Helix 10
AB1
A
194 215Right-handed alpha
Helix 11
AB2
A
223 225Right-handed 310
Helix 12
AB3
A
256 260Right-handed 310
Helix 13
AB4
A
261 266Right-handed alpha
Helix 14
AB5
A
272 289Right-handed alpha
Helix 15
AB6
A
297 308Right-handed alpha
Helix 16
AB7
A
317 328Right-handed alpha
Helix 17
AB8
A
343 348Right-handed alpha
Helix 18
AB9
A
349 353Right-handed 310
Helix 19
AC1
A
356 362Right-handed alpha
Helix 20
AC2
I
6 13Right-handed alpha
Helix 21
AC3
B
3 8Right-handed alpha
Helix 22
AC4
B
15 29Right-handed alpha
Helix 23
AC5
B
31 35Right-handed 310
Helix 24
AC6
B
39 56Right-handed alpha
Helix 25
AC7
B
56 87Right-handed alpha
Helix 26
AC8
B
94 96Right-handed 310
Helix 27
AC9
B
131 137Right-handed alpha
Helix 28
AD1
B
139 151Right-handed alpha
Helix 29
AD2
B
182 191Right-handed alpha
Helix 30
AD3
B
194 215Right-handed alpha
Helix 31
AD4
B
223 225Right-handed 310
Helix 32
AD5
B
256 260Right-handed 310
Helix 33
AD6
B
261 266Right-handed alpha
Helix 34
AD7
B
272 289Right-handed alpha
Helix 35
AD8
B
297 308Right-handed alpha
Helix 36
AD9
B
317 328Right-handed alpha
Helix 37
AE1
B
331 335Right-handed 310
Helix 38
AE2
B
343 348Right-handed alpha
Helix 39
AE3
B
349 353Right-handed 310
Helix 40
AE4
B
356 363Right-handed alpha
Helix 41
AE5
J
6 13Right-handed alpha
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There are 6 sheets in PDB entry 8FEC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 106first strand
Strand 2
A
111 117anti-parallel
Strand 3
A
123 130anti-parallel
Strand 4
A
170 176anti-parallel
Strand 5
A
161 166anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 218first strand
Strand 2
A
244 245anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 229first strand
Strand 2
A
235 237anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 105first strand
Strand 2
B
111 117anti-parallel
Strand 3
B
123 130anti-parallel
Strand 4
B
170 176anti-parallel
Strand 5
B
161 166anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 218first strand
Strand 2
B
244 245anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 229first strand
Strand 2
B
235 237anti-parallel
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