Analysis of interatomic Contacts of Structural Units in PDB entry:
8FEE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FEE entry

There are 10 chains in PDB entry 8FEE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 18	PRO 409
B	ILE 3	LYS 343
C	VAL 39	ASN 310
D	ARG 42	PRO 468
E	CYS 33	GLU 390
F	MET 1	ASP 399
G	GLY 2	ARG 325
H	GLY 2	ASP 324
I	LEU 16	ARG 266
J	ARG 27	VAL 289

There are116 helices in PDB entry 8FEE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	43	Right-handed alpha
Helix 2	AA2	A	152	165	Right-handed alpha
Helix 3	AA3	A	168	183	Right-handed alpha
Helix 4	AA4	A	187	205	Right-handed alpha
Helix 5	AA5	A	207	249	Right-handed alpha
Helix 6	AA6	A	249	275	Right-handed alpha
Helix 7	AA7	A	275	295	Right-handed alpha
Helix 8	AA8	A	296	319	Right-handed alpha
Helix 9	AA9	A	351	355	Right-handed 310
Helix 10	AB1	B	4	30	Right-handed alpha
Helix 11	AB2	B	126	128	Right-handed 310
Helix 12	AB3	B	135	150	Right-handed alpha
Helix 13	AB4	B	151	167	Right-handed alpha
Helix 14	AB5	B	169	189	Right-handed alpha
Helix 15	AB6	B	190	211	Right-handed alpha
Helix 16	AB7	B	211	231	Right-handed alpha
Helix 17	AB8	B	232	278	Right-handed alpha
Helix 18	AB9	B	278	300	Right-handed alpha
Helix 19	AC1	C	125	127	Right-handed 310
Helix 20	AC2	C	134	147	Right-handed alpha
Helix 21	AC3	C	150	168	Right-handed alpha
Helix 22	AC4	C	172	188	Right-handed alpha
Helix 23	AC5	C	189	210	Right-handed alpha
Helix 24	AC6	C	210	230	Right-handed alpha
Helix 25	AC7	C	231	255	Right-handed alpha
Helix 26	AC8	C	258	275	Right-handed alpha
Helix 27	AC9	C	276	296	Right-handed alpha
Helix 28	AD1	C	297	300	Right-handed 310
Helix 29	AD2	D	135	137	Right-handed 310
Helix 30	AD3	D	144	159	Right-handed alpha
Helix 31	AD4	D	167	181	Right-handed alpha
Helix 32	AD5	D	184	205	Right-handed alpha
Helix 33	AD6	D	205	224	Right-handed alpha
Helix 34	AD7	D	226	243	Right-handed alpha
Helix 35	AD8	D	249	291	Right-handed alpha
Helix 36	AD9	D	292	317	Right-handed alpha
Helix 37	AE1	D	399	403	Right-handed 310
Helix 38	AE2	D	444	450	Right-handed alpha
Helix 39	AE3	D	452	459	Right-handed alpha
Helix 40	AE4	E	144	146	Right-handed 310
Helix 41	AE5	E	153	168	Right-handed alpha
Helix 42	AE6	E	170	185	Right-handed alpha
Helix 43	AE7	E	187	207	Right-handed alpha
Helix 44	AE8	E	208	229	Right-handed alpha
Helix 45	AE9	E	229	250	Right-handed alpha
Helix 46	AF1	E	250	275	Right-handed alpha
Helix 47	AF2	E	275	296	Right-handed alpha
Helix 48	AF3	E	299	304	Right-handed alpha
Helix 49	AF4	E	313	315	Right-handed 310
Helix 50	AF5	E	316	321	Right-handed alpha
Helix 51	AF6	E	335	343	Right-handed alpha
Helix 52	AF7	E	350	359	Right-handed alpha
Helix 53	AF8	E	363	367	Right-handed 310
Helix 54	AF9	F	6	28	Right-handed alpha
Helix 55	AG1	F	31	37	Right-handed alpha
Helix 56	AG2	F	136	150	Right-handed alpha
Helix 57	AG3	F	152	167	Right-handed alpha
Helix 58	AG4	F	170	191	Right-handed alpha
Helix 59	AG5	F	191	212	Right-handed alpha
Helix 60	AG6	F	212	232	Right-handed alpha
Helix 61	AG7	F	233	258	Right-handed alpha
Helix 62	AG8	F	261	279	Right-handed alpha
Helix 63	AG9	F	279	301	Right-handed alpha
Helix 64	AH1	F	327	331	Right-handed 310
Helix 65	AH2	F	360	364	Right-handed 310
Helix 66	AH3	F	376	382	Right-handed alpha
Helix 67	AH4	G	42	50	Right-handed alpha
Helix 68	AH5	G	72	80	Right-handed alpha
Helix 69	AH6	G	97	109	Right-handed alpha
Helix 70	AH7	G	113	128	Right-handed alpha
Helix 71	AH8	G	137	141	Right-handed 310
Helix 72	AH9	G	142	155	Right-handed alpha
Helix 73	AI1	G	172	191	Right-handed alpha
Helix 74	AI2	G	201	207	Right-handed alpha
Helix 75	AI3	G	225	230	Right-handed alpha
Helix 76	AI4	G	233	240	Right-handed alpha
Helix 77	AI5	G	295	311	Right-handed alpha
Helix 78	AI6	G	312	324	Right-handed alpha
Helix 79	AI7	H	42	50	Right-handed alpha
Helix 80	AI8	H	72	80	Right-handed alpha
Helix 81	AI9	H	81	83	Right-handed 310
Helix 82	AJ1	H	97	109	Right-handed alpha
Helix 83	AJ2	H	113	128	Right-handed alpha
Helix 84	AJ3	H	137	141	Right-handed 310
Helix 85	AJ4	H	142	155	Right-handed alpha
Helix 86	AJ5	H	172	190	Right-handed alpha
Helix 87	AJ6	H	200	207	Right-handed alpha
Helix 88	AJ7	H	225	230	Right-handed alpha
Helix 89	AJ8	H	233	242	Right-handed alpha
Helix 90	AJ9	H	295	308	Right-handed alpha
Helix 91	AK1	H	309	311	Right-handed 310
Helix 92	AK2	H	312	324	Right-handed alpha
Helix 93	AK3	I	17	40	Right-handed alpha
Helix 94	AK4	I	43	58	Right-handed alpha
Helix 95	AK5	I	59	85	Right-handed alpha
Helix 96	AK6	I	86	88	Right-handed 310
Helix 97	AK7	I	89	101	Right-handed alpha
Helix 98	AK8	I	101	114	Right-handed alpha
Helix 99	AK9	I	114	129	Right-handed alpha
Helix 100	AL1	I	130	138	Right-handed alpha
Helix 101	AL2	I	141	182	Right-handed alpha
Helix 102	AL3	I	184	190	Right-handed alpha
Helix 103	AL4	I	197	225	Right-handed alpha
Helix 104	AL5	I	231	262	Right-handed alpha
Helix 105	AL6	J	28	45	Right-handed alpha
Helix 106	AL7	J	45	53	Right-handed alpha
Helix 107	AL8	J	53	67	Right-handed alpha
Helix 108	AL9	J	68	73	Right-handed 310
Helix 109	AM1	J	76	104	Right-handed alpha
Helix 110	AM2	J	108	118	Right-handed alpha
Helix 111	AM3	J	121	148	Right-handed alpha
Helix 112	AM4	J	149	157	Right-handed alpha
Helix 113	AM5	J	160	198	Right-handed alpha
Helix 114	AM6	J	203	214	Right-handed alpha
Helix 115	AM7	J	216	244	Right-handed alpha
Helix 116	AM8	J	247	279	Right-handed alpha

There are 18 sheets in PDB entry 8FEE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	55	first strand
Strand 2	A	89	98	anti-parallel
Strand 3	A	73	86	anti-parallel
Strand 4	A	67	70	anti-parallel
Strand 5	A	125	128	parallel
Strand 6	A	111	114	anti-parallel
Strand 7	A	144	149	parallel
Strand 8	A	49	55	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	332	first strand
Strand 2	F	307	313	parallel
Strand 3	A	325	328	parallel
Strand 4	E	329	333	parallel
Strand 5	B	314	317	parallel
Strand 6	B	329	333	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	332	first strand
Strand 2	F	307	313	parallel
Strand 3	D	324	328	parallel
Strand 4	C	304	306	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	359	first strand
Strand 2	E	386	387	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	373	first strand
Strand 2	D	395	397	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	395	first strand
Strand 2	D	380	382	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	125	first strand
Strand 2	B	36	43	parallel
Strand 3	B	76	84	anti-parallel
Strand 4	B	60	71	anti-parallel
Strand 5	B	54	57	anti-parallel
Strand 6	B	106	111	parallel
Strand 7	B	94	99	anti-parallel
Strand 8	B	130	131	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	310	first strand
Strand 2	E	326	327	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	42	first strand
Strand 2	C	77	83	anti-parallel
Strand 3	C	45	46	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	42	first strand
Strand 2	C	77	83	anti-parallel
Strand 3	C	63	74	anti-parallel
Strand 4	C	57	60	anti-parallel
Strand 5	C	106	111	parallel
Strand 6	C	94	99	anti-parallel
Strand 7	C	129	130	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	134	first strand
Strand 2	D	46	53	parallel
Strand 3	D	84	92	anti-parallel
Strand 4	D	70	81	anti-parallel
Strand 5	D	64	67	anti-parallel
Strand 6	D	115	118	parallel
Strand 7	D	103	106	anti-parallel
Strand 8	D	139	140	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	408	410	first strand
Strand 2	D	416	419	anti-parallel
Strand 3	D	433	434	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	143	first strand
Strand 2	E	55	60	parallel
Strand 3	E	94	99	anti-parallel
Strand 4	E	78	85	anti-parallel
Strand 5	E	72	75	anti-parallel
Strand 6	E	122	127	parallel
Strand 7	E	110	115	anti-parallel
Strand 8	E	148	150	parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	128	first strand
Strand 2	F	40	47	parallel
Strand 3	F	79	86	anti-parallel
Strand 4	F	64	74	anti-parallel
Strand 5	F	58	61	anti-parallel
Strand 6	F	108	113	parallel
Strand 7	F	96	101	anti-parallel
Strand 8	F	131	132	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	17	27	first strand
Strand 2	G	5	14	anti-parallel
Strand 3	G	58	63	anti-parallel
Strand 4	G	66	67	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	83	86	first strand
Strand 2	G	161	165	parallel
Strand 3	G	194	197	parallel
Strand 4	G	33	36	parallel
Strand 5	G	210	214	parallel
Strand 6	G	219	224	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	23	first strand
Strand 2	H	5	12	anti-parallel
Strand 3	H	58	63	anti-parallel
Strand 4	H	66	67	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	85	86	first strand
Strand 2	H	161	165	parallel
Strand 3	H	193	197	parallel
Strand 4	H	33	36	parallel
Strand 5	H	210	214	parallel
Strand 6	H	219	224	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FEE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FEE