Analysis of interatomic Contacts of Structural Units in PDB entry:
8FEF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FEF entry

There are 10 chains in PDB entry 8FEF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 18PRO 409
B
SER 2LYS 343
C
MET 1ASN 310
D
ARG 42PRO 468
E
CYS 33GLU 390
F
MET 1ASP 399
G
GLY 2ARG 325
H
GLY 2ASP 324
I
GLY 14ARG 266
J
ARG 27VAL 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are121 helices in PDB entry 8FEF. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
18 43Right-handed alpha
Helix 2
AA2
A
102 106Right-handed 310
Helix 3
AA3
A
152 167Right-handed alpha
Helix 4
AA4
A
168 184Right-handed alpha
Helix 5
AA5
A
186 205Right-handed alpha
Helix 6
AA6
A
207 249Right-handed alpha
Helix 7
AA7
A
249 295Right-handed alpha
Helix 8
AA8
A
299 319Right-handed alpha
Helix 9
AA9
A
351 355Right-handed 310
Helix 10
AB1
B
3 30Right-handed alpha
Helix 11
AB2
B
126 128Right-handed 310
Helix 12
AB3
B
135 142Right-handed alpha
Helix 13
AB4
B
142 149Right-handed alpha
Helix 14
AB5
B
151 167Right-handed alpha
Helix 15
AB6
B
169 189Right-handed alpha
Helix 16
AB7
B
190 211Right-handed alpha
Helix 17
AB8
B
211 231Right-handed alpha
Helix 18
AB9
B
232 278Right-handed alpha
Helix 19
AC1
B
278 301Right-handed alpha
Helix 20
AC2
C
8 29Right-handed alpha
Helix 21
AC3
C
125 127Right-handed 310
Helix 22
AC4
C
134 148Right-handed alpha
Helix 23
AC5
C
150 169Right-handed alpha
Helix 24
AC6
C
171 188Right-handed alpha
Helix 25
AC7
C
189 210Right-handed alpha
Helix 26
AC8
C
210 231Right-handed alpha
Helix 27
AC9
C
231 236Right-handed alpha
Helix 28
AD1
C
237 255Right-handed alpha
Helix 29
AD2
C
258 276Right-handed alpha
Helix 30
AD3
C
276 287Right-handed alpha
Helix 31
AD4
C
290 295Right-handed alpha
Helix 32
AD5
C
295 300Right-handed alpha
Helix 33
AD6
D
135 137Right-handed 310
Helix 34
AD7
D
144 159Right-handed alpha
Helix 35
AD8
D
167 181Right-handed alpha
Helix 36
AD9
D
184 205Right-handed alpha
Helix 37
AE1
D
205 224Right-handed alpha
Helix 38
AE2
D
226 243Right-handed alpha
Helix 39
AE3
D
249 291Right-handed alpha
Helix 40
AE4
D
292 315Right-handed alpha
Helix 41
AE5
D
391 395Right-handed 310
Helix 42
AE6
D
444 450Right-handed alpha
Helix 43
AE7
D
452 461Right-handed alpha
Helix 44
AE8
E
38 42Right-handed 310
Helix 45
AE9
E
144 146Right-handed 310
Helix 46
AF1
E
153 168Right-handed alpha
Helix 47
AF2
E
169 185Right-handed alpha
Helix 48
AF3
E
187 207Right-handed alpha
Helix 49
AF4
E
208 229Right-handed alpha
Helix 50
AF5
E
229 250Right-handed alpha
Helix 51
AF6
E
250 275Right-handed alpha
Helix 52
AF7
E
275 296Right-handed alpha
Helix 53
AF8
E
299 308Right-handed alpha
Helix 54
AF9
E
313 315Right-handed 310
Helix 55
AG1
E
316 321Right-handed alpha
Helix 56
AG2
E
335 343Right-handed alpha
Helix 57
AG3
E
350 359Right-handed alpha
Helix 58
AG4
E
363 367Right-handed 310
Helix 59
AG5
F
6 29Right-handed alpha
Helix 60
AG6
F
31 37Right-handed alpha
Helix 61
AG7
F
136 150Right-handed alpha
Helix 62
AG8
F
152 167Right-handed alpha
Helix 63
AG9
F
170 191Right-handed alpha
Helix 64
AH1
F
191 212Right-handed alpha
Helix 65
AH2
F
212 233Right-handed alpha
Helix 66
AH3
F
233 258Right-handed alpha
Helix 67
AH4
F
261 279Right-handed alpha
Helix 68
AH5
F
279 301Right-handed alpha
Helix 69
AH6
F
327 331Right-handed 310
Helix 70
AH7
F
360 364Right-handed 310
Helix 71
AH8
F
376 382Right-handed alpha
Helix 72
AH9
G
42 52Right-handed alpha
Helix 73
AI1
G
69 71Right-handed 310
Helix 74
AI2
G
75 80Right-handed alpha
Helix 75
AI3
G
97 110Right-handed alpha
Helix 76
AI4
G
113 128Right-handed alpha
Helix 77
AI5
G
142 155Right-handed alpha
Helix 78
AI6
G
172 191Right-handed alpha
Helix 79
AI7
G
202 207Right-handed alpha
Helix 80
AI8
G
225 230Right-handed alpha
Helix 81
AI9
G
233 242Right-handed alpha
Helix 82
AJ1
G
251 255Right-handed 310
Helix 83
AJ2
G
294 309Right-handed alpha
Helix 84
AJ3
G
312 324Right-handed alpha
Helix 85
AJ4
H
42 50Right-handed alpha
Helix 86
AJ5
H
72 80Right-handed alpha
Helix 87
AJ6
H
97 109Right-handed alpha
Helix 88
AJ7
H
113 128Right-handed alpha
Helix 89
AJ8
H
137 141Right-handed 310
Helix 90
AJ9
H
142 156Right-handed alpha
Helix 91
AK1
H
172 191Right-handed alpha
Helix 92
AK2
H
200 207Right-handed alpha
Helix 93
AK3
H
225 230Right-handed alpha
Helix 94
AK4
H
233 241Right-handed alpha
Helix 95
AK5
H
294 308Right-handed alpha
Helix 96
AK6
H
309 311Right-handed 310
Helix 97
AK7
H
312 324Right-handed alpha
Helix 98
AK8
I
16 40Right-handed alpha
Helix 99
AK9
I
43 58Right-handed alpha
Helix 100
AL1
I
59 85Right-handed alpha
Helix 101
AL2
I
89 101Right-handed alpha
Helix 102
AL3
I
101 113Right-handed alpha
Helix 103
AL4
I
114 129Right-handed alpha
Helix 104
AL5
I
130 138Right-handed alpha
Helix 105
AL6
I
141 146Right-handed alpha
Helix 106
AL7
I
146 180Right-handed alpha
Helix 107
AL8
I
184 192Right-handed alpha
Helix 108
AL9
I
197 225Right-handed alpha
Helix 109
AM1
I
231 263Right-handed alpha
Helix 110
AM2
J
28 45Right-handed alpha
Helix 111
AM3
J
45 53Right-handed alpha
Helix 112
AM4
J
54 67Right-handed alpha
Helix 113
AM5
J
68 72Right-handed 310
Helix 114
AM6
J
76 104Right-handed alpha
Helix 115
AM7
J
108 120Right-handed alpha
Helix 116
AM8
J
120 148Right-handed alpha
Helix 117
AM9
J
149 157Right-handed alpha
Helix 118
AN1
J
160 198Right-handed alpha
Helix 119
AN2
J
203 214Right-handed alpha
Helix 120
AN3
J
216 244Right-handed alpha
Helix 121
AN4
J
247 279Right-handed alpha
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There are 18 sheets in PDB entry 8FEF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
49 55first strand
Strand 2
A
90 98anti-parallel
Strand 3
A
73 85anti-parallel
Strand 4
A
67 70anti-parallel
Strand 5
A
123 128parallel
Strand 6
A
111 116anti-parallel
Strand 7
A
144 149parallel
Strand 8
A
49 55parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
330 331first strand
Strand 2
F
307 312parallel
Strand 3
A
325 328parallel
Strand 4
E
326 333parallel
Strand 5
B
307 317parallel
Strand 6
B
329 333anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
330 331first strand
Strand 2
F
307 312parallel
Strand 3
D
324 328parallel
Strand 4
C
304 308parallel
Strand 5
B
307 317parallel
Strand 6
B
329 333anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
358 359first strand
Strand 2
E
386 387anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
372 373first strand
Strand 2
D
396 397parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
387 388first strand
Strand 2
D
385 386anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
393 395first strand
Strand 2
D
380 382anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
124 125first strand
Strand 2
B
36 43parallel
Strand 3
B
76 84anti-parallel
Strand 4
B
60 71anti-parallel
Strand 5
B
54 57anti-parallel
Strand 6
B
106 111parallel
Strand 7
B
94 99anti-parallel
Strand 8
B
130 131parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
123 124first strand
Strand 2
C
41 46parallel
Strand 3
C
77 83anti-parallel
Strand 4
C
63 74anti-parallel
Strand 5
C
57 60anti-parallel
Strand 6
C
106 111parallel
Strand 7
C
94 99anti-parallel
Strand 8
C
129 130parallel
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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
133 134first strand
Strand 2
D
46 53parallel
Strand 3
D
84 92anti-parallel
Strand 4
D
70 81anti-parallel
Strand 5
D
64 67anti-parallel
Strand 6
D
115 118parallel
Strand 7
D
103 106anti-parallel
Strand 8
D
139 140parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
408 410first strand
Strand 2
D
416 419anti-parallel
Strand 3
D
433 434anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
88 89first strand
Strand 2
E
92 99anti-parallel
Strand 3
E
55 60anti-parallel
Strand 4
E
142 143parallel
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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
88 89first strand
Strand 2
E
92 99anti-parallel
Strand 3
E
78 85anti-parallel
Strand 4
E
72 75anti-parallel
Strand 5
E
122 127parallel
Strand 6
E
110 115anti-parallel
Strand 7
E
148 150parallel
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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
127 128first strand
Strand 2
F
40 47parallel
Strand 3
F
79 86anti-parallel
Strand 4
F
64 74anti-parallel
Strand 5
F
58 61anti-parallel
Strand 6
F
108 113parallel
Strand 7
F
96 101anti-parallel
Strand 8
F
131 132parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
20 27first strand
Strand 2
G
5 12anti-parallel
Strand 3
G
58 63anti-parallel
Strand 4
G
66 67anti-parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
83 86first strand
Strand 2
G
161 165parallel
Strand 3
G
193 197parallel
Strand 4
G
33 36parallel
Strand 5
G
210 214parallel
Strand 6
G
219 224anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
17 27first strand
Strand 2
H
5 14anti-parallel
Strand 3
H
58 63anti-parallel
Strand 4
H
66 67anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
83 86first strand
Strand 2
H
161 165parallel
Strand 3
H
193 197parallel
Strand 4
H
33 36parallel
Strand 5
H
210 214parallel
Strand 6
H
219 224anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il