Analysis of interatomic Contacts of Structural Units in PDB entry:
8FEI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FEI entry

There is 1 chain in PDB entry 8FEI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4LYS 686
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8FEI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 28Right-handed alpha
Helix 2
AA2
A
41 51Right-handed alpha
Helix 3
AA3
A
60 68Right-handed alpha
Helix 4
AA4
A
106 110Right-handed 310
Helix 5
AA5
A
125 135Right-handed alpha
Helix 6
AA6
A
147 156Right-handed alpha
Helix 7
AA7
A
168 172Right-handed 310
Helix 8
AA8
A
177 182Right-handed alpha
Helix 9
AA9
A
189 200Right-handed alpha
Helix 10
AB1
A
211 217Right-handed alpha
Helix 11
AB2
A
220 222Right-handed 310
Helix 12
AB3
A
238 243Right-handed alpha
Helix 13
AB4
A
258 275Right-handed alpha
Helix 14
AB5
A
315 321Right-handed alpha
Helix 15
AB6
A
321 333Right-handed alpha
Helix 16
AB7
A
351 365Right-handed alpha
Helix 17
AB8
A
377 386Right-handed alpha
Helix 18
AB9
A
395 405Right-handed alpha
Helix 19
AC1
A
447 451Right-handed 310
Helix 20
AC2
A
464 475Right-handed alpha
Helix 21
AC3
A
523 535Right-handed alpha
Helix 22
AC4
A
543 549Right-handed alpha
Helix 23
AC5
A
555 559Right-handed 310
Helix 24
AC6
A
562 564Right-handed 310
Helix 25
AC7
A
597 599Right-handed 310
Helix 26
AC8
A
600 616Right-handed alpha
Helix 27
AC9
A
652 668Right-handed alpha
Helix 28
AD1
A
674 684Right-handed alpha
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There are 9 sheets in PDB entry 8FEI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 11first strand
Strand 2
A
33 38parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
251 254anti-parallel
Strand 3
A
75 81anti-parallel
Strand 4
A
306 309anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
113 115parallel
Strand 3
A
205 209parallel
Strand 4
A
91 99anti-parallel
Strand 5
A
224 227anti-parallel
Strand 6
A
233 234anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
113 115parallel
Strand 3
A
205 209parallel
Strand 4
A
91 99anti-parallel
Strand 5
A
245 248anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 350first strand
Strand 2
A
369 374parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 394first strand
Strand 2
A
593 596anti-parallel
Strand 3
A
408 414anti-parallel
Strand 4
A
643 646anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 541first strand
Strand 2
A
430 438anti-parallel
Strand 3
A
566 570anti-parallel
Strand 4
A
573 576anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 541first strand
Strand 2
A
430 438anti-parallel
Strand 3
A
587 590anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 454first strand
Strand 2
A
487 488parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il