Analysis of interatomic Contacts of Structural Units in PDB entry:
8FEJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FEJ entry

There are 3 chains in PDB entry 8FEJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 22	LYS 477
B	SER 22	LYS 477
C	SER 22	LYS 477

There are 39 helices in PDB entry 8FEJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	32	Right-handed alpha
Helix 2	AA2	A	64	66	Right-handed 310
Helix 3	AA3	A	67	90	Right-handed alpha
Helix 4	AA4	A	92	94	Right-handed 310
Helix 5	AA5	A	119	147	Right-handed alpha
Helix 6	AA6	A	169	178	Right-handed 310
Helix 7	AA7	A	186	209	Right-handed alpha
Helix 8	AA8	A	210	213	Right-handed 310
Helix 9	AA9	A	223	230	Right-handed alpha
Helix 10	AB1	A	234	242	Right-handed alpha
Helix 11	AB2	A	247	255	Right-handed alpha
Helix 12	AB3	A	344	352	Right-handed alpha
Helix 13	AB4	A	447	473	Right-handed alpha
Helix 14	AB5	B	24	32	Right-handed alpha
Helix 15	AB6	B	64	66	Right-handed 310
Helix 16	AB7	B	67	90	Right-handed alpha
Helix 17	AB8	B	92	94	Right-handed 310
Helix 18	AB9	B	119	147	Right-handed alpha
Helix 19	AC1	B	169	178	Right-handed 310
Helix 20	AC2	B	186	209	Right-handed alpha
Helix 21	AC3	B	210	213	Right-handed 310
Helix 22	AC4	B	223	230	Right-handed alpha
Helix 23	AC5	B	234	242	Right-handed alpha
Helix 24	AC6	B	247	255	Right-handed alpha
Helix 25	AC7	B	344	352	Right-handed alpha
Helix 26	AC8	B	447	473	Right-handed alpha
Helix 27	AC9	C	24	32	Right-handed alpha
Helix 28	AD1	C	64	66	Right-handed 310
Helix 29	AD2	C	67	90	Right-handed alpha
Helix 30	AD3	C	92	94	Right-handed 310
Helix 31	AD4	C	119	147	Right-handed alpha
Helix 32	AD5	C	169	178	Right-handed 310
Helix 33	AD6	C	186	209	Right-handed alpha
Helix 34	AD7	C	210	213	Right-handed 310
Helix 35	AD8	C	223	230	Right-handed alpha
Helix 36	AD9	C	234	242	Right-handed alpha
Helix 37	AE1	C	247	255	Right-handed alpha
Helix 38	AE2	C	344	352	Right-handed alpha
Helix 39	AE3	C	447	473	Right-handed alpha

There are 24 sheets in PDB entry 8FEJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	39	first strand
Strand 2	A	288	292	anti-parallel
Strand 3	A	310	312	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	45	first strand
Strand 2	A	279	282	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	55	first strand
Strand 2	A	270	276	anti-parallel
Strand 3	A	261	265	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	97	first strand
Strand 2	A	109	110	anti-parallel
Strand 3	C	420	422	parallel
Strand 4	C	415	417	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	156	first strand
Strand 2	A	164	167	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	258	259	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	297	first strand
Strand 2	A	302	305	anti-parallel
Strand 3	A	360	362	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	406	first strand
Strand 2	A	377	380	anti-parallel
Strand 3	A	372	374	anti-parallel
Strand 4	B	117	118	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	417	first strand
Strand 2	A	420	422	anti-parallel
Strand 3	B	109	110	parallel
Strand 4	B	96	97	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	39	first strand
Strand 2	B	288	292	anti-parallel
Strand 3	B	310	312	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	45	first strand
Strand 2	B	279	282	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	55	first strand
Strand 2	B	270	276	anti-parallel
Strand 3	B	261	265	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	156	first strand
Strand 2	B	164	167	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	258	259	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	297	first strand
Strand 2	B	302	305	anti-parallel
Strand 3	B	360	362	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	406	first strand
Strand 2	B	377	380	anti-parallel
Strand 3	B	372	374	anti-parallel
Strand 4	C	117	118	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	415	417	first strand
Strand 2	B	420	422	anti-parallel
Strand 3	C	109	110	parallel
Strand 4	C	96	97	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	39	first strand
Strand 2	C	288	292	anti-parallel
Strand 3	C	310	312	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	45	first strand
Strand 2	C	279	282	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	55	first strand
Strand 2	C	270	276	anti-parallel
Strand 3	C	261	265	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	156	first strand
Strand 2	C	164	167	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	222	first strand
Strand 2	C	258	259	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	297	first strand
Strand 2	C	302	305	anti-parallel
Strand 3	C	360	362	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	374	first strand
Strand 2	C	377	380	anti-parallel
Strand 3	C	405	406	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FEJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FEJ