Analysis of interatomic Contacts of Structural Units in PDB entry:
8FEK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FEK entry

There is 1 chain in PDB entry 8FEK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 12GLU 441
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8FEK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 35Right-handed alpha
Helix 2
AA2
A
77 92Right-handed alpha
Helix 3
AA3
A
100 104Right-handed 310
Helix 4
AA4
A
105 110Right-handed alpha
Helix 5
AA5
A
130 135Right-handed 310
Helix 6
AA6
A
136 142Right-handed alpha
Helix 7
AA7
A
158 168Right-handed alpha
Helix 8
AA8
A
183 199Right-handed alpha
Helix 9
AA9
A
201 210Right-handed alpha
Helix 10
AB1
A
227 232Right-handed alpha
Helix 11
AB2
A
236 247Right-handed alpha
Helix 12
AB3
A
253 258Right-handed alpha
Helix 13
AB4
A
261 266Right-handed alpha
Helix 14
AB5
A
267 270Right-handed 310
Helix 15
AB6
A
304 308Right-handed 310
Helix 16
AB7
A
330 345Right-handed alpha
Helix 17
AB8
A
361 369Right-handed 310
Helix 18
AB9
A
393 395Right-handed 310
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There are 3 sheets in PDB entry 8FEK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 56first strand
Strand 2
A
39 46anti-parallel
Strand 3
A
320 326anti-parallel
Strand 4
A
309 315anti-parallel
Strand 5
A
298 303anti-parallel
Strand 6
A
289 291anti-parallel
Strand 7
A
283 284anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
233 235anti-parallel
Strand 3
A
219 220anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 374first strand
Strand 2
A
377 384anti-parallel
Strand 3
A
387 391anti-parallel
Strand 4
A
397 402anti-parallel
Strand 5
A
407 410anti-parallel
Strand 6
A
416 421anti-parallel
Strand 7
A
428 433anti-parallel
Strand 8
A
436 440anti-parallel
Strand 9
A
370 374anti-parallel
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