Analysis of interatomic Contacts of Structural Units in PDB entry:
8FEM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FEM entry

There is 1 chain in PDB entry 8FEM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 17LEU 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8FEM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 43Right-handed alpha
Helix 2
AA2
A
56 65Right-handed alpha
Helix 3
AA3
A
68 72Right-handed alpha
Helix 4
AA4
A
86 91Right-handed alpha
Helix 5
AA5
A
109 114Right-handed alpha
Helix 6
AA6
A
114 133Right-handed alpha
Helix 7
AA7
A
143 147Right-handed 310
Helix 8
AA8
A
164 172Right-handed alpha
Helix 9
AA9
A
175 196Right-handed alpha
Helix 10
AB1
A
218 225Right-handed alpha
Helix 11
AB2
A
231 233Right-handed 310
Helix 12
AB3
A
234 239Right-handed alpha
Helix 13
AB4
A
246 259Right-handed alpha
Helix 14
AB5
A
275 286Right-handed alpha
Helix 15
AB6
A
310 316Right-handed alpha
Helix 16
AB7
A
323 337Right-handed alpha
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There are 3 sheets in PDB entry 8FEM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 77first strand
Strand 2
A
45 51parallel
Strand 3
A
20 25parallel
Strand 4
A
95 98parallel
Strand 5
A
137 141parallel
Strand 6
A
200 204parallel
Strand 7
A
264 267parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
307 308parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 209first strand
Strand 2
A
240 245parallel
Strand 3
A
271 274anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il