Analysis of interatomic Contacts of Structural Units in PDB entry:
8FFF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FFF entry

There is 1 chain in PDB entry 8FFF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ASP 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8FFF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 30Right-handed alpha
Helix 2
AA2
A
61 65Right-handed 310
Helix 3
AA3
A
66 70Right-handed 310
Helix 4
AA4
A
74 81Right-handed alpha
Helix 5
AA5
A
103 112Right-handed alpha
Helix 6
AA6
A
120 129Right-handed alpha
Helix 7
AA7
A
129 141Right-handed alpha
Helix 8
AA8
A
152 170Right-handed alpha
Helix 9
AA9
A
192 204Right-handed alpha
Helix 10
AB1
A
266 284Right-handed alpha
Helix 11
AB2
A
317 326Right-handed alpha
Helix 12
AB3
A
329 355Right-handed alpha
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There are 4 sheets in PDB entry 8FFF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 55first strand
Strand 2
A
36 43anti-parallel
Strand 3
A
4 11parallel
Strand 4
A
90 95parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 151first strand
Strand 2
A
209 214anti-parallel
Strand 3
A
174 178anti-parallel
Strand 4
A
188 190anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
219 227anti-parallel
Strand 3
A
237 239anti-parallel
Strand 4
A
259 260anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
219 227anti-parallel
Strand 3
A
288 296anti-parallel
Strand 4
A
302 308anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il