Analysis of interatomic Contacts of Structural Units in PDB entry:
8FFJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FFJ entry

There are 4 chains in PDB entry 8FFJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
X	THR 23	ALA 644
J	GLU 1	VAL 211
Q	ASP 1	CYS 214
I	GLU 1	SER 120

There are 23 helices in PDB entry 8FFJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	X	38	50	Right-handed alpha
Helix 2	AA2	X	71	77	Right-handed 310
Helix 3	AA3	X	107	110	Right-handed 310
Helix 4	AA4	X	168	173	Right-handed alpha
Helix 5	AA5	X	347	351	Right-handed 310
Helix 6	AA6	X	359	365	Right-handed 310
Helix 7	AA7	X	377	381	Right-handed 310
Helix 8	AA8	X	393	401	Right-handed 310
Helix 9	AA9	X	422	426	Right-handed 310
Helix 10	AB1	X	436	439	Right-handed 310
Helix 11	AB2	X	476	480	Right-handed 310
Helix 12	AB3	X	481	485	Right-handed 310
Helix 13	AB4	X	500	507	Right-handed alpha
Helix 14	AB5	X	515	519	Right-handed 310
Helix 15	AB6	J	28	32	Right-handed 310
Helix 16	AB7	J	61	64	Right-handed 310
Helix 17	AB8	J	127	131	Right-handed 310
Helix 18	AB9	J	156	158	Right-handed 310
Helix 19	AC1	J	186	190	Right-handed alpha
Helix 20	AC2	Q	123	128	Right-handed alpha
Helix 21	AC3	Q	182	187	Right-handed alpha
Helix 22	AC4	I	87	91	Right-handed 310
Helix 23	AC5	I	101	105	Right-handed 310

There are 23 sheets in PDB entry 8FFJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	25	27	first strand
Strand 2	X	55	57	parallel
Strand 3	X	79	80	parallel
Strand 4	X	101	102	parallel
Strand 5	X	147	148	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	60	63	first strand
Strand 2	X	84	87	parallel
Strand 3	X	112	117	parallel
Strand 4	X	152	156	parallel
Strand 5	X	182	184	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	258	260	first strand
Strand 2	X	263	265	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	272	274	first strand
Strand 2	X	281	283	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	289	291	first strand
Strand 2	X	294	296	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	311	312	first strand
Strand 2	X	304	306	anti-parallel
Strand 3	X	330	333	parallel
Strand 4	X	319	322	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	342	343	first strand
Strand 2	X	369	371	parallel
Strand 3	X	405	406	parallel
Strand 4	X	430	431	parallel
Strand 5	X	460	461	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	374	376	first strand
Strand 2	X	410	412	parallel
Strand 3	X	441	446	parallel
Strand 4	X	465	469	parallel
Strand 5	X	493	496	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	539	541	first strand
Strand 2	X	534	536	anti-parallel
Strand 3	X	559	561	parallel
Strand 4	X	554	556	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	590	592	first strand
Strand 2	X	595	597	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	616	617	first strand
Strand 2	X	623	624	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	19	25	anti-parallel
Strand 3	J	77	81	anti-parallel
Strand 4	J	68	72	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	107	111	parallel
Strand 3	J	88	95	anti-parallel
Strand 4	J	34	39	anti-parallel
Strand 5	J	45	51	anti-parallel
Strand 6	J	57	59	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	107	111	parallel
Strand 3	J	88	95	anti-parallel
Strand 4	J	100	103	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	120	124	first strand
Strand 2	J	135	145	anti-parallel
Strand 3	J	175	185	anti-parallel
Strand 4	J	163	165	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	120	124	first strand
Strand 2	J	135	145	anti-parallel
Strand 3	J	175	185	anti-parallel
Strand 4	J	169	171	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	150	154	first strand
Strand 2	J	195	200	anti-parallel
Strand 3	J	206	210	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	5	7	first strand
Strand 2	Q	19	24	anti-parallel
Strand 3	Q	70	75	anti-parallel
Strand 4	Q	62	67	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	10	13	first strand
Strand 2	Q	102	106	parallel
Strand 3	Q	85	90	anti-parallel
Strand 4	Q	33	38	anti-parallel
Strand 5	Q	44	49	anti-parallel
Strand 6	Q	53	54	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	114	118	first strand
Strand 2	Q	131	139	anti-parallel
Strand 3	Q	173	180	anti-parallel
Strand 4	Q	159	163	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	153	155	first strand
Strand 2	Q	144	150	anti-parallel
Strand 3	Q	191	198	anti-parallel
Strand 4	Q	207	210	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	69	73	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	114	118	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	33	39	anti-parallel
Strand 5	I	45	51	anti-parallel
Strand 6	I	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FFJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FFJ