Analysis of interatomic Contacts of Structural Units in PDB entry:
8FFL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FFL entry

There are 4 chains in PDB entry 8FFL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 31	PRO 720
B	GLU 31	PRO 720
C	GLU 31	PRO 720
D	GLU 31	PRO 720

There are126 helices in PDB entry 8FFL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	76	87	Right-handed alpha
Helix 2	AA2	A	89	93	Right-handed 310
Helix 3	AA3	A	94	103	Right-handed alpha
Helix 4	AA4	A	108	112	Right-handed 310
Helix 5	AA5	A	119	127	Right-handed alpha
Helix 6	AA6	A	135	146	Right-handed alpha
Helix 7	AA7	A	151	155	Right-handed 310
Helix 8	AA8	A	166	174	Right-handed alpha
Helix 9	AA9	A	176	186	Right-handed alpha
Helix 10	AB1	A	196	200	Right-handed 310
Helix 11	AB2	A	212	220	Right-handed alpha
Helix 12	AB3	A	222	232	Right-handed alpha
Helix 13	AB4	A	248	257	Right-handed alpha
Helix 14	AB5	A	260	282	Right-handed alpha
Helix 15	AB6	A	286	290	Right-handed 310
Helix 16	AB7	A	297	306	Right-handed alpha
Helix 17	AB8	A	307	316	Right-handed alpha
Helix 18	AB9	A	323	327	Right-handed 310
Helix 19	AC1	A	355	363	Right-handed alpha
Helix 20	AC2	A	368	373	Right-handed alpha
Helix 21	AC3	A	377	412	Right-handed alpha
Helix 22	AC4	A	431	459	Right-handed alpha
Helix 23	AC5	A	459	466	Right-handed alpha
Helix 24	AC6	A	466	493	Right-handed alpha
Helix 25	AC7	A	496	512	Right-handed alpha
Helix 26	AC8	A	513	518	Right-handed 310
Helix 27	AC9	A	519	524	Right-handed alpha
Helix 28	AD1	A	530	534	Right-handed alpha
Helix 29	AD2	A	535	560	Right-handed alpha
Helix 30	AD3	A	592	605	Right-handed alpha
Helix 31	AD4	A	618	649	Right-handed alpha
Helix 32	AD5	A	656	672	Right-handed alpha
Helix 33	AD6	A	711	719	Right-handed alpha
Helix 34	AD7	B	76	87	Right-handed alpha
Helix 35	AD8	B	89	93	Right-handed 310
Helix 36	AD9	B	94	103	Right-handed alpha
Helix 37	AE1	B	108	112	Right-handed 310
Helix 38	AE2	B	119	127	Right-handed alpha
Helix 39	AE3	B	135	146	Right-handed alpha
Helix 40	AE4	B	166	174	Right-handed alpha
Helix 41	AE5	B	176	186	Right-handed alpha
Helix 42	AE6	B	212	220	Right-handed alpha
Helix 43	AE7	B	222	232	Right-handed alpha
Helix 44	AE8	B	248	256	Right-handed alpha
Helix 45	AE9	B	260	282	Right-handed alpha
Helix 46	AF1	B	286	290	Right-handed 310
Helix 47	AF2	B	297	306	Right-handed alpha
Helix 48	AF3	B	307	316	Right-handed alpha
Helix 49	AF4	B	320	327	Right-handed 310
Helix 50	AF5	B	355	363	Right-handed alpha
Helix 51	AF6	B	368	373	Right-handed alpha
Helix 52	AF7	B	377	413	Right-handed alpha
Helix 53	AF8	B	430	466	Right-handed alpha
Helix 54	AF9	B	467	469	Right-handed 310
Helix 55	AG1	B	470	493	Right-handed alpha
Helix 56	AG2	B	496	512	Right-handed alpha
Helix 57	AG3	B	513	518	Right-handed 310
Helix 58	AG4	B	519	524	Right-handed alpha
Helix 59	AG5	B	529	560	Right-handed alpha
Helix 60	AG6	B	592	605	Right-handed alpha
Helix 61	AG7	B	618	650	Right-handed alpha
Helix 62	AG8	B	656	672	Right-handed alpha
Helix 63	AG9	B	711	717	Right-handed alpha
Helix 64	AH1	C	76	87	Right-handed alpha
Helix 65	AH2	C	89	93	Right-handed 310
Helix 66	AH3	C	94	103	Right-handed alpha
Helix 67	AH4	C	108	112	Right-handed 310
Helix 68	AH5	C	119	127	Right-handed alpha
Helix 69	AH6	C	135	146	Right-handed alpha
Helix 70	AH7	C	151	155	Right-handed 310
Helix 71	AH8	C	166	174	Right-handed alpha
Helix 72	AH9	C	176	186	Right-handed alpha
Helix 73	AI1	C	212	220	Right-handed alpha
Helix 74	AI2	C	222	232	Right-handed alpha
Helix 75	AI3	C	248	256	Right-handed alpha
Helix 76	AI4	C	260	282	Right-handed alpha
Helix 77	AI5	C	286	290	Right-handed 310
Helix 78	AI6	C	297	306	Right-handed alpha
Helix 79	AI7	C	307	316	Right-handed alpha
Helix 80	AI8	C	323	327	Right-handed 310
Helix 81	AI9	C	355	363	Right-handed alpha
Helix 82	AJ1	C	368	373	Right-handed alpha
Helix 83	AJ2	C	377	413	Right-handed alpha
Helix 84	AJ3	C	430	459	Right-handed alpha
Helix 85	AJ4	C	459	466	Right-handed alpha
Helix 86	AJ5	C	470	493	Right-handed alpha
Helix 87	AJ6	C	496	511	Right-handed alpha
Helix 88	AJ7	C	512	518	Right-handed 310
Helix 89	AJ8	C	519	524	Right-handed alpha
Helix 90	AJ9	C	530	534	Right-handed alpha
Helix 91	AK1	C	536	560	Right-handed alpha
Helix 92	AK2	C	592	605	Right-handed alpha
Helix 93	AK3	C	618	650	Right-handed alpha
Helix 94	AK4	C	655	672	Right-handed alpha
Helix 95	AK5	C	711	717	Right-handed alpha
Helix 96	AK6	D	76	87	Right-handed alpha
Helix 97	AK7	D	89	93	Right-handed 310
Helix 98	AK8	D	94	103	Right-handed alpha
Helix 99	AK9	D	108	112	Right-handed 310
Helix 100	AL1	D	119	127	Right-handed alpha
Helix 101	AL2	D	135	146	Right-handed alpha
Helix 102	AL3	D	166	174	Right-handed alpha
Helix 103	AL4	D	176	186	Right-handed alpha
Helix 104	AL5	D	196	200	Right-handed 310
Helix 105	AL6	D	212	220	Right-handed alpha
Helix 106	AL7	D	222	232	Right-handed alpha
Helix 107	AL8	D	248	256	Right-handed alpha
Helix 108	AL9	D	260	281	Right-handed alpha
Helix 109	AM1	D	286	290	Right-handed 310
Helix 110	AM2	D	297	306	Right-handed alpha
Helix 111	AM3	D	307	316	Right-handed alpha
Helix 112	AM4	D	320	327	Right-handed 310
Helix 113	AM5	D	355	363	Right-handed alpha
Helix 114	AM6	D	368	373	Right-handed alpha
Helix 115	AM7	D	377	414	Right-handed alpha
Helix 116	AM8	D	430	459	Right-handed alpha
Helix 117	AM9	D	459	466	Right-handed alpha
Helix 118	AN1	D	471	492	Right-handed alpha
Helix 119	AN2	D	496	512	Right-handed alpha
Helix 120	AN3	D	513	518	Right-handed 310
Helix 121	AN4	D	519	524	Right-handed alpha
Helix 122	AN5	D	528	559	Right-handed alpha
Helix 123	AN6	D	592	605	Right-handed alpha
Helix 124	AN7	D	618	649	Right-handed alpha
Helix 125	AN8	D	656	672	Right-handed alpha
Helix 126	AN9	D	711	719	Right-handed alpha

There are 7 sheets in PDB entry 8FFL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	335	first strand
Strand 2	A	338	344	anti-parallel
Strand 3	A	701	708	anti-parallel
Strand 4	A	687	690	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	335	first strand
Strand 2	B	338	344	anti-parallel
Strand 3	B	700	710	anti-parallel
Strand 4	B	687	692	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	674	675	first strand
Strand 2	B	678	679	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	335	first strand
Strand 2	C	338	344	anti-parallel
Strand 3	C	701	710	anti-parallel
Strand 4	C	687	690	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	674	675	first strand
Strand 2	C	678	679	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	329	335	first strand
Strand 2	D	338	344	anti-parallel
Strand 3	D	701	710	anti-parallel
Strand 4	D	687	690	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	674	675	first strand
Strand 2	D	678	679	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FFL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FFL