Analysis of interatomic Contacts of Structural Units in PDB entry:
8FFO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FFO entry

There are 4 chains in PDB entry 8FFO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 29	ASP 638
B	TRP 29	ASP 638
C	TRP 29	ASP 638
D	TRP 29	ASP 638

There are124 helices in PDB entry 8FFO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	47	Right-handed alpha
Helix 2	AA2	A	47	55	Right-handed alpha
Helix 3	AA3	A	57	67	Right-handed alpha
Helix 4	AA4	A	81	89	Right-handed alpha
Helix 5	AA5	A	91	101	Right-handed alpha
Helix 6	AA6	A	102	108	Right-handed 310
Helix 7	AA7	A	119	127	Right-handed alpha
Helix 8	AA8	A	129	140	Right-handed alpha
Helix 9	AA9	A	165	174	Right-handed alpha
Helix 10	AB1	A	175	185	Right-handed alpha
Helix 11	AB2	A	198	205	Right-handed alpha
Helix 12	AB3	A	210	223	Right-handed alpha
Helix 13	AB4	A	231	235	Right-handed 310
Helix 14	AB5	A	242	250	Right-handed alpha
Helix 15	AB6	A	252	261	Right-handed alpha
Helix 16	AB7	A	291	298	Right-handed alpha
Helix 17	AB8	A	302	309	Right-handed 310
Helix 18	AB9	A	310	324	Right-handed alpha
Helix 19	AC1	A	324	349	Right-handed alpha
Helix 20	AC2	A	379	411	Right-handed alpha
Helix 21	AC3	A	411	416	Right-handed alpha
Helix 22	AC4	A	422	445	Right-handed alpha
Helix 23	AC5	A	450	464	Right-handed alpha
Helix 24	AC6	A	465	472	Right-handed 310
Helix 25	AC7	A	475	487	Right-handed alpha
Helix 26	AC8	A	488	512	Right-handed alpha
Helix 27	AC9	A	525	538	Right-handed alpha
Helix 28	AD1	A	552	566	Right-handed alpha
Helix 29	AD2	A	568	588	Right-handed alpha
Helix 30	AD3	A	588	608	Right-handed alpha
Helix 31	AD4	A	609	613	Right-handed 310
Helix 32	AD5	B	30	47	Right-handed alpha
Helix 33	AD6	B	47	55	Right-handed alpha
Helix 34	AD7	B	57	67	Right-handed alpha
Helix 35	AD8	B	81	89	Right-handed alpha
Helix 36	AD9	B	91	101	Right-handed alpha
Helix 37	AE1	B	102	108	Right-handed 310
Helix 38	AE2	B	119	127	Right-handed alpha
Helix 39	AE3	B	129	140	Right-handed alpha
Helix 40	AE4	B	165	174	Right-handed alpha
Helix 41	AE5	B	175	185	Right-handed alpha
Helix 42	AE6	B	198	205	Right-handed alpha
Helix 43	AE7	B	210	223	Right-handed alpha
Helix 44	AE8	B	231	235	Right-handed 310
Helix 45	AE9	B	242	250	Right-handed alpha
Helix 46	AF1	B	252	261	Right-handed alpha
Helix 47	AF2	B	291	298	Right-handed alpha
Helix 48	AF3	B	302	309	Right-handed 310
Helix 49	AF4	B	310	324	Right-handed alpha
Helix 50	AF5	B	324	349	Right-handed alpha
Helix 51	AF6	B	379	411	Right-handed alpha
Helix 52	AF7	B	411	416	Right-handed alpha
Helix 53	AF8	B	422	445	Right-handed alpha
Helix 54	AF9	B	450	464	Right-handed alpha
Helix 55	AG1	B	465	472	Right-handed 310
Helix 56	AG2	B	475	487	Right-handed alpha
Helix 57	AG3	B	488	512	Right-handed alpha
Helix 58	AG4	B	525	538	Right-handed alpha
Helix 59	AG5	B	552	566	Right-handed alpha
Helix 60	AG6	B	568	588	Right-handed alpha
Helix 61	AG7	B	588	608	Right-handed alpha
Helix 62	AG8	B	609	613	Right-handed 310
Helix 63	AG9	C	30	47	Right-handed alpha
Helix 64	AH1	C	47	55	Right-handed alpha
Helix 65	AH2	C	57	67	Right-handed alpha
Helix 66	AH3	C	81	89	Right-handed alpha
Helix 67	AH4	C	91	101	Right-handed alpha
Helix 68	AH5	C	102	108	Right-handed 310
Helix 69	AH6	C	119	127	Right-handed alpha
Helix 70	AH7	C	129	140	Right-handed alpha
Helix 71	AH8	C	165	174	Right-handed alpha
Helix 72	AH9	C	175	185	Right-handed alpha
Helix 73	AI1	C	198	205	Right-handed alpha
Helix 74	AI2	C	210	223	Right-handed alpha
Helix 75	AI3	C	231	235	Right-handed 310
Helix 76	AI4	C	242	250	Right-handed alpha
Helix 77	AI5	C	252	261	Right-handed alpha
Helix 78	AI6	C	291	298	Right-handed alpha
Helix 79	AI7	C	302	309	Right-handed 310
Helix 80	AI8	C	310	324	Right-handed alpha
Helix 81	AI9	C	324	349	Right-handed alpha
Helix 82	AJ1	C	379	411	Right-handed alpha
Helix 83	AJ2	C	411	416	Right-handed alpha
Helix 84	AJ3	C	422	445	Right-handed alpha
Helix 85	AJ4	C	450	464	Right-handed alpha
Helix 86	AJ5	C	465	472	Right-handed 310
Helix 87	AJ6	C	475	487	Right-handed alpha
Helix 88	AJ7	C	488	512	Right-handed alpha
Helix 89	AJ8	C	525	538	Right-handed alpha
Helix 90	AJ9	C	552	566	Right-handed alpha
Helix 91	AK1	C	568	588	Right-handed alpha
Helix 92	AK2	C	588	608	Right-handed alpha
Helix 93	AK3	C	609	613	Right-handed 310
Helix 94	AK4	D	30	47	Right-handed alpha
Helix 95	AK5	D	47	55	Right-handed alpha
Helix 96	AK6	D	57	67	Right-handed alpha
Helix 97	AK7	D	81	89	Right-handed alpha
Helix 98	AK8	D	91	101	Right-handed alpha
Helix 99	AK9	D	102	108	Right-handed 310
Helix 100	AL1	D	119	127	Right-handed alpha
Helix 101	AL2	D	129	140	Right-handed alpha
Helix 102	AL3	D	165	174	Right-handed alpha
Helix 103	AL4	D	175	185	Right-handed alpha
Helix 104	AL5	D	198	205	Right-handed alpha
Helix 105	AL6	D	210	223	Right-handed alpha
Helix 106	AL7	D	231	235	Right-handed 310
Helix 107	AL8	D	242	250	Right-handed alpha
Helix 108	AL9	D	252	261	Right-handed alpha
Helix 109	AM1	D	291	298	Right-handed alpha
Helix 110	AM2	D	302	309	Right-handed 310
Helix 111	AM3	D	310	324	Right-handed alpha
Helix 112	AM4	D	324	349	Right-handed alpha
Helix 113	AM5	D	379	411	Right-handed alpha
Helix 114	AM6	D	411	416	Right-handed alpha
Helix 115	AM7	D	422	445	Right-handed alpha
Helix 116	AM8	D	450	464	Right-handed alpha
Helix 117	AM9	D	465	472	Right-handed 310
Helix 118	AN1	D	475	487	Right-handed alpha
Helix 119	AN2	D	488	512	Right-handed alpha
Helix 120	AN3	D	525	538	Right-handed alpha
Helix 121	AN4	D	552	566	Right-handed alpha
Helix 122	AN5	D	568	588	Right-handed alpha
Helix 123	AN6	D	588	608	Right-handed alpha
Helix 124	AN7	D	609	613	Right-handed 310

There are 12 sheets in PDB entry 8FFO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	112	first strand
Strand 2	A	115	116	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	270	first strand
Strand 2	A	273	279	anti-parallel
Strand 3	A	630	636	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	354	first strand
Strand 2	A	368	370	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	112	first strand
Strand 2	B	115	116	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	270	first strand
Strand 2	B	273	279	anti-parallel
Strand 3	B	630	636	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	354	first strand
Strand 2	B	368	370	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	112	first strand
Strand 2	C	115	116	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	270	first strand
Strand 2	C	273	279	anti-parallel
Strand 3	C	630	636	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	354	first strand
Strand 2	C	368	370	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	112	first strand
Strand 2	D	115	116	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	270	first strand
Strand 2	D	273	279	anti-parallel
Strand 3	D	630	636	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	354	first strand
Strand 2	D	368	370	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FFO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FFO