Analysis of interatomic Contacts of Structural Units in PDB entry:
8FFS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FFS entry

There are 3 chains in PDB entry 8FFS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 1033
B	MET 1	SER 1033
C	MET 1	SER 1033

There are119 helices in PDB entry 8FFS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	7	Right-handed alpha
Helix 2	AA2	A	8	29	Right-handed alpha
Helix 3	AA3	A	53	61	Right-handed alpha
Helix 4	AA4	A	61	68	Right-handed alpha
Helix 5	AA5	A	99	115	Right-handed alpha
Helix 6	AA6	A	116	118	Right-handed 310
Helix 7	AA7	A	119	126	Right-handed alpha
Helix 8	AA8	A	150	162	Right-handed alpha
Helix 9	AA9	A	162	168	Right-handed alpha
Helix 10	AB1	A	189	196	Right-handed alpha
Helix 11	AB2	A	199	211	Right-handed alpha
Helix 12	AB3	A	242	248	Right-handed alpha
Helix 13	AB4	A	298	314	Right-handed alpha
Helix 14	AB5	A	315	317	Right-handed 310
Helix 15	AB6	A	329	360	Right-handed alpha
Helix 16	AB7	A	361	386	Right-handed alpha
Helix 17	AB8	A	391	401	Right-handed alpha
Helix 18	AB9	A	401	423	Right-handed alpha
Helix 19	AC1	A	426	454	Right-handed alpha
Helix 20	AC2	A	455	459	Right-handed 310
Helix 21	AC3	A	460	497	Right-handed alpha
Helix 22	AC4	A	509	536	Right-handed alpha
Helix 23	AC5	A	536	558	Right-handed alpha
Helix 24	AC6	A	582	601	Right-handed alpha
Helix 25	AC7	A	632	636	Right-handed 310
Helix 26	AC8	A	642	655	Right-handed alpha
Helix 27	AC9	A	670	674	Right-handed 310
Helix 28	AD1	A	690	707	Right-handed alpha
Helix 29	AD2	A	731	738	Right-handed alpha
Helix 30	AD3	A	741	754	Right-handed alpha
Helix 31	AD4	A	776	779	Right-handed 310
Helix 32	AD5	A	781	787	Right-handed 310
Helix 33	AD6	A	835	849	Right-handed alpha
Helix 34	AD7	A	860	868	Right-handed alpha
Helix 35	AD8	A	870	892	Right-handed alpha
Helix 36	AD9	A	895	902	Right-handed alpha
Helix 37	AE1	A	903	919	Right-handed alpha
Helix 38	AE2	A	923	954	Right-handed alpha
Helix 39	AE3	A	958	991	Right-handed alpha
Helix 40	AE4	A	995	1032	Right-handed alpha
Helix 41	AE5	B	2	8	Right-handed alpha
Helix 42	AE6	B	8	30	Right-handed alpha
Helix 43	AE7	B	53	61	Right-handed alpha
Helix 44	AE8	B	61	70	Right-handed alpha
Helix 45	AE9	B	99	115	Right-handed alpha
Helix 46	AF1	B	116	118	Right-handed 310
Helix 47	AF2	B	119	126	Right-handed alpha
Helix 48	AF3	B	150	162	Right-handed alpha
Helix 49	AF4	B	162	168	Right-handed alpha
Helix 50	AF5	B	189	196	Right-handed alpha
Helix 51	AF6	B	199	211	Right-handed alpha
Helix 52	AF7	B	242	248	Right-handed alpha
Helix 53	AF8	B	262	265	Right-handed alpha
Helix 54	AF9	B	298	314	Right-handed alpha
Helix 55	AG1	B	315	317	Right-handed 310
Helix 56	AG2	B	329	360	Right-handed alpha
Helix 57	AG3	B	361	386	Right-handed alpha
Helix 58	AG4	B	391	424	Right-handed alpha
Helix 59	AG5	B	426	452	Right-handed alpha
Helix 60	AG6	B	454	459	Right-handed 310
Helix 61	AG7	B	460	496	Right-handed alpha
Helix 62	AG8	B	509	536	Right-handed alpha
Helix 63	AG9	B	536	558	Right-handed alpha
Helix 64	AH1	B	582	601	Right-handed alpha
Helix 65	AH2	B	632	636	Right-handed 310
Helix 66	AH3	B	642	655	Right-handed alpha
Helix 67	AH4	B	690	706	Right-handed alpha
Helix 68	AH5	B	731	739	Right-handed alpha
Helix 69	AH6	B	741	755	Right-handed alpha
Helix 70	AH7	B	776	779	Right-handed 310
Helix 71	AH8	B	781	786	Right-handed 310
Helix 72	AH9	B	800	803	Right-handed alpha
Helix 73	AI1	B	835	849	Right-handed alpha
Helix 74	AI2	B	860	892	Right-handed alpha
Helix 75	AI3	B	894	902	Right-handed alpha
Helix 76	AI4	B	903	919	Right-handed alpha
Helix 77	AI5	B	923	955	Right-handed alpha
Helix 78	AI6	B	958	970	Right-handed alpha
Helix 79	AI7	B	970	990	Right-handed alpha
Helix 80	AI8	B	995	1016	Right-handed alpha
Helix 81	AI9	B	1016	1032	Right-handed alpha
Helix 82	AJ1	C	2	7	Right-handed alpha
Helix 83	AJ2	C	8	30	Right-handed alpha
Helix 84	AJ3	C	53	61	Right-handed alpha
Helix 85	AJ4	C	61	67	Right-handed alpha
Helix 86	AJ5	C	99	115	Right-handed alpha
Helix 87	AJ6	C	116	118	Right-handed 310
Helix 88	AJ7	C	119	126	Right-handed alpha
Helix 89	AJ8	C	150	162	Right-handed alpha
Helix 90	AJ9	C	162	169	Right-handed alpha
Helix 91	AK1	C	189	196	Right-handed alpha
Helix 92	AK2	C	199	211	Right-handed alpha
Helix 93	AK3	C	242	248	Right-handed alpha
Helix 94	AK4	C	298	314	Right-handed alpha
Helix 95	AK5	C	315	317	Right-handed 310
Helix 96	AK6	C	329	359	Right-handed alpha
Helix 97	AK7	C	361	387	Right-handed alpha
Helix 98	AK8	C	391	424	Right-handed alpha
Helix 99	AK9	C	426	454	Right-handed alpha
Helix 100	AL1	C	455	459	Right-handed 310
Helix 101	AL2	C	462	497	Right-handed alpha
Helix 102	AL3	C	509	536	Right-handed alpha
Helix 103	AL4	C	536	558	Right-handed alpha
Helix 104	AL5	C	582	600	Right-handed alpha
Helix 105	AL6	C	638	641	Right-handed 310
Helix 106	AL7	C	642	658	Right-handed alpha
Helix 107	AL8	C	690	707	Right-handed alpha
Helix 108	AL9	C	731	739	Right-handed alpha
Helix 109	AM1	C	741	755	Right-handed alpha
Helix 110	AM2	C	776	779	Right-handed 310
Helix 111	AM3	C	781	787	Right-handed 310
Helix 112	AM4	C	835	849	Right-handed alpha
Helix 113	AM5	C	860	868	Right-handed alpha
Helix 114	AM6	C	871	892	Right-handed alpha
Helix 115	AM7	C	896	902	Right-handed alpha
Helix 116	AM8	C	903	919	Right-handed alpha
Helix 117	AM9	C	923	954	Right-handed alpha
Helix 118	AN1	C	958	991	Right-handed alpha
Helix 119	AN2	C	995	1032	Right-handed alpha

There are 24 sheets in PDB entry 8FFS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	75	83	anti-parallel
Strand 5	A	814	818	anti-parallel
Strand 6	A	821	830	anti-parallel
Strand 7	A	712	717	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	75	83	anti-parallel
Strand 5	A	814	818	anti-parallel
Strand 6	A	821	830	anti-parallel
Strand 7	A	679	685	anti-parallel
Strand 8	A	854	858	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	177	first strand
Strand 2	A	284	293	anti-parallel
Strand 3	A	138	144	anti-parallel
Strand 4	A	321	328	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	177	first strand
Strand 2	A	284	293	anti-parallel
Strand 3	A	278	281	anti-parallel
Strand 4	A	605	612	anti-parallel
Strand 5	A	623	630	anti-parallel
Strand 6	A	570	576	anti-parallel
Strand 7	A	661	664	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	272	first strand
Strand 2	A	182	188	anti-parallel
Strand 3	A	767	774	parallel
Strand 4	A	756	762	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	219	first strand
Strand 2	A	232	235	anti-parallel
Strand 3	B	723	730	parallel
Strand 4	B	804	811	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	253	first strand
Strand 2	A	259	261	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	804	811	first strand
Strand 2	A	723	730	anti-parallel
Strand 3	C	232	235	parallel
Strand 4	C	215	219	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	789	791	first strand
Strand 2	A	797	799	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	42	48	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	75	83	anti-parallel
Strand 5	B	814	818	anti-parallel
Strand 6	B	821	830	anti-parallel
Strand 7	B	712	717	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	42	48	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	75	83	anti-parallel
Strand 5	B	814	818	anti-parallel
Strand 6	B	821	830	anti-parallel
Strand 7	B	679	685	anti-parallel
Strand 8	B	854	858	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	177	first strand
Strand 2	B	284	293	anti-parallel
Strand 3	B	138	144	anti-parallel
Strand 4	B	321	328	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	177	first strand
Strand 2	B	284	293	anti-parallel
Strand 3	B	278	281	anti-parallel
Strand 4	B	605	612	anti-parallel
Strand 5	B	623	630	anti-parallel
Strand 6	B	570	576	anti-parallel
Strand 7	B	661	665	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	272	first strand
Strand 2	B	182	188	anti-parallel
Strand 3	B	766	774	parallel
Strand 4	B	756	763	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	235	first strand
Strand 2	C	723	730	parallel
Strand 3	C	804	811	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	253	first strand
Strand 2	B	259	261	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	789	791	first strand
Strand 2	B	797	799	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	130	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	75	83	anti-parallel
Strand 5	C	814	818	anti-parallel
Strand 6	C	821	830	anti-parallel
Strand 7	C	712	717	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	130	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	75	83	anti-parallel
Strand 5	C	814	818	anti-parallel
Strand 6	C	821	830	anti-parallel
Strand 7	C	678	684	anti-parallel
Strand 8	C	857	859	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	177	first strand
Strand 2	C	284	293	anti-parallel
Strand 3	C	138	144	anti-parallel
Strand 4	C	321	328	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	177	first strand
Strand 2	C	284	293	anti-parallel
Strand 3	C	278	281	anti-parallel
Strand 4	C	605	615	anti-parallel
Strand 5	C	618	630	anti-parallel
Strand 6	C	570	576	anti-parallel
Strand 7	C	661	665	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	272	first strand
Strand 2	C	182	188	anti-parallel
Strand 3	C	766	774	parallel
Strand 4	C	756	763	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	253	first strand
Strand 2	C	259	261	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	789	791	first strand
Strand 2	C	797	799	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FFS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FFS