Analysis of interatomic Contacts of Structural Units in PDB entry:
8FFU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FFU entry

There are 6 chains in PDB entry 8FFU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 7	THR 369
B	ARG 17	GLY 218
B	CYS 220	THR 369
C	LEU 7	ILE 367
D	ARG 17	GLY 218
D	CYS 220	THR 369

There are 77 helices in PDB entry 8FFU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	15	Right-handed alpha
Helix 2	AA2	A	31	40	Right-handed alpha
Helix 3	AA3	A	41	46	Right-handed alpha
Helix 4	AA4	A	58	67	Right-handed alpha
Helix 5	AA5	A	73	75	Right-handed 310
Helix 6	AA6	A	81	95	Right-handed alpha
Helix 7	AA7	A	109	118	Right-handed alpha
Helix 8	AA8	A	128	132	Right-handed 310
Helix 9	AA9	A	136	141	Right-handed alpha
Helix 10	AB1	A	165	180	Right-handed alpha
Helix 11	AB2	A	204	208	Right-handed 310
Helix 12	AB3	A	223	227	Right-handed 310
Helix 13	AB4	A	234	246	Right-handed alpha
Helix 14	AB5	A	253	266	Right-handed alpha
Helix 15	AB6	A	267	269	Right-handed 310
Helix 16	AB7	A	270	293	Right-handed alpha
Helix 17	AB8	A	317	330	Right-handed alpha
Helix 18	AB9	A	337	340	Right-handed 310
Helix 19	AC1	A	352	369	Right-handed alpha
Helix 20	AC2	B	31	40	Right-handed alpha
Helix 21	AC3	B	44	48	Right-handed 310
Helix 22	AC4	B	58	67	Right-handed alpha
Helix 23	AC5	B	73	75	Right-handed 310
Helix 24	AC6	B	81	95	Right-handed alpha
Helix 25	AC7	B	109	118	Right-handed alpha
Helix 26	AC8	B	128	132	Right-handed 310
Helix 27	AC9	B	136	141	Right-handed alpha
Helix 28	AD1	B	142	144	Right-handed 310
Helix 29	AD2	B	165	180	Right-handed alpha
Helix 30	AD3	B	188	192	Right-handed 310
Helix 31	AD4	B	204	208	Right-handed 310
Helix 32	AD5	B	223	227	Right-handed 310
Helix 33	AD6	B	234	246	Right-handed alpha
Helix 34	AD7	B	253	266	Right-handed alpha
Helix 35	AD8	B	267	269	Right-handed 310
Helix 36	AD9	B	270	293	Right-handed alpha
Helix 37	AE1	B	317	330	Right-handed alpha
Helix 38	AE2	B	337	340	Right-handed 310
Helix 39	AE3	B	352	368	Right-handed alpha
Helix 40	AE4	C	8	15	Right-handed alpha
Helix 41	AE5	C	31	40	Right-handed alpha
Helix 42	AE6	C	41	46	Right-handed alpha
Helix 43	AE7	C	58	67	Right-handed alpha
Helix 44	AE8	C	73	75	Right-handed 310
Helix 45	AE9	C	81	95	Right-handed alpha
Helix 46	AF1	C	109	118	Right-handed alpha
Helix 47	AF2	C	128	132	Right-handed 310
Helix 48	AF3	C	136	141	Right-handed alpha
Helix 49	AF4	C	165	180	Right-handed alpha
Helix 50	AF5	C	223	227	Right-handed 310
Helix 51	AF6	C	234	246	Right-handed alpha
Helix 52	AF7	C	253	266	Right-handed alpha
Helix 53	AF8	C	267	269	Right-handed 310
Helix 54	AF9	C	270	293	Right-handed alpha
Helix 55	AG1	C	317	330	Right-handed alpha
Helix 56	AG2	C	337	340	Right-handed 310
Helix 57	AG3	C	352	367	Right-handed alpha
Helix 58	AG4	D	31	40	Right-handed alpha
Helix 59	AG5	D	41	46	Right-handed alpha
Helix 60	AG6	D	58	67	Right-handed alpha
Helix 61	AG7	D	73	75	Right-handed 310
Helix 62	AG8	D	81	95	Right-handed alpha
Helix 63	AG9	D	109	118	Right-handed alpha
Helix 64	AH1	D	128	132	Right-handed 310
Helix 65	AH2	D	136	141	Right-handed alpha
Helix 66	AH3	D	165	180	Right-handed alpha
Helix 67	AH4	D	188	192	Right-handed 310
Helix 68	AH5	D	217	222	Right-handed alpha
Helix 69	AH6	D	223	227	Right-handed 310
Helix 70	AH7	D	234	245	Right-handed alpha
Helix 71	AH8	D	246	248	Right-handed 310
Helix 72	AH9	D	253	266	Right-handed alpha
Helix 73	AI1	D	267	269	Right-handed 310
Helix 74	AI2	D	270	293	Right-handed alpha
Helix 75	AI3	D	317	330	Right-handed alpha
Helix 76	AI4	D	337	340	Right-handed 310
Helix 77	AI5	D	352	369	Right-handed alpha

There are 16 sheets in PDB entry 8FFU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	21	first strand
Strand 2	A	331	332	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	80	first strand
Strand 2	A	229	232	anti-parallel
Strand 3	A	211	216	anti-parallel
Strand 4	A	182	186	parallel
Strand 5	A	148	154	parallel
Strand 6	A	100	105	parallel
Strand 7	A	121	126	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	297	first strand
Strand 2	A	310	311	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	307	first strand
Strand 2	A	345	348	anti-parallel
Strand 3	A	334	335	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	B	331	332	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	80	first strand
Strand 2	B	229	232	anti-parallel
Strand 3	B	211	216	anti-parallel
Strand 4	B	182	186	parallel
Strand 5	B	148	154	parallel
Strand 6	B	100	105	parallel
Strand 7	B	121	126	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	297	first strand
Strand 2	B	310	311	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	307	first strand
Strand 2	B	345	348	anti-parallel
Strand 3	B	334	335	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	331	332	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	80	first strand
Strand 2	C	229	232	anti-parallel
Strand 3	C	211	216	anti-parallel
Strand 4	C	182	186	parallel
Strand 5	C	148	154	parallel
Strand 6	C	100	105	parallel
Strand 7	C	121	126	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	297	first strand
Strand 2	C	310	311	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	307	first strand
Strand 2	C	345	348	anti-parallel
Strand 3	C	334	335	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	21	first strand
Strand 2	D	331	332	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	80	first strand
Strand 2	D	229	232	anti-parallel
Strand 3	D	211	216	anti-parallel
Strand 4	D	182	186	parallel
Strand 5	D	148	154	parallel
Strand 6	D	100	105	parallel
Strand 7	D	121	126	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	296	297	first strand
Strand 2	D	310	311	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	306	307	first strand
Strand 2	D	345	348	anti-parallel
Strand 3	D	334	335	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FFU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FFU