Analysis of interatomic Contacts of Structural Units in PDB entry:
8FFW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FFW entry

There are 4 chains in PDB entry 8FFW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 15	ASP 701
B	GLU 15	ASP 732
C	THR 519	LYS 777
D	SER 13	ALA 421

There are 84 helices in PDB entry 8FFW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	36	Right-handed alpha
Helix 2	AA2	A	42	63	Right-handed alpha
Helix 3	AA3	A	64	65	Right-handed 310
Helix 4	AA4	A	66	71	Right-handed 310
Helix 5	AA5	A	99	108	Right-handed alpha
Helix 6	AA6	A	113	121	Right-handed alpha
Helix 7	AA7	A	137	143	Right-handed 310
Helix 8	AA8	A	195	198	Right-handed 310
Helix 9	AA9	A	199	212	Right-handed alpha
Helix 10	AB1	A	295	299	Right-handed 310
Helix 11	AB2	A	300	304	Right-handed 310
Helix 12	AB3	A	305	318	Right-handed alpha
Helix 13	AB4	A	374	378	Right-handed 310
Helix 14	AB5	A	379	383	Right-handed 310
Helix 15	AB6	A	406	428	Right-handed alpha
Helix 16	AB7	A	430	451	Right-handed alpha
Helix 17	AB8	A	452	454	Right-handed 310
Helix 18	AB9	A	455	460	Right-handed alpha
Helix 19	AC1	A	461	463	Right-handed 310
Helix 20	AC2	A	476	483	Right-handed alpha
Helix 21	AC3	A	498	504	Right-handed alpha
Helix 22	AC4	A	505	507	Right-handed 310
Helix 23	AC5	A	508	514	Right-handed alpha
Helix 24	AC6	A	525	530	Right-handed alpha
Helix 25	AC7	A	554	578	Right-handed alpha
Helix 26	AC8	A	607	615	Right-handed alpha
Helix 27	AC9	A	621	629	Right-handed alpha
Helix 28	AD1	A	640	653	Right-handed alpha
Helix 29	AD2	A	656	674	Right-handed alpha
Helix 30	AD3	A	681	696	Right-handed alpha
Helix 31	AD4	B	25	37	Right-handed alpha
Helix 32	AD5	B	42	63	Right-handed alpha
Helix 33	AD6	B	64	65	Right-handed 310
Helix 34	AD7	B	66	71	Right-handed 310
Helix 35	AD8	B	99	108	Right-handed alpha
Helix 36	AD9	B	113	121	Right-handed alpha
Helix 37	AE1	B	136	143	Right-handed 310
Helix 38	AE2	B	194	198	Right-handed 310
Helix 39	AE3	B	199	211	Right-handed alpha
Helix 40	AE4	B	300	304	Right-handed 310
Helix 41	AE5	B	305	318	Right-handed alpha
Helix 42	AE6	B	374	378	Right-handed 310
Helix 43	AE7	B	379	383	Right-handed 310
Helix 44	AE8	B	406	428	Right-handed alpha
Helix 45	AE9	B	430	452	Right-handed alpha
Helix 46	AF1	B	455	460	Right-handed alpha
Helix 47	AF2	B	477	482	Right-handed alpha
Helix 48	AF3	B	498	504	Right-handed alpha
Helix 49	AF4	B	505	507	Right-handed 310
Helix 50	AF5	B	508	514	Right-handed alpha
Helix 51	AF6	B	525	533	Right-handed alpha
Helix 52	AF7	B	554	565	Right-handed alpha
Helix 53	AF8	B	568	579	Right-handed alpha
Helix 54	AF9	B	609	616	Right-handed alpha
Helix 55	AG1	B	621	627	Right-handed 310
Helix 56	AG2	B	640	653	Right-handed alpha
Helix 57	AG3	B	656	674	Right-handed alpha
Helix 58	AG4	B	680	696	Right-handed alpha
Helix 59	AG5	B	724	729	Right-handed 310
Helix 60	AG6	C	531	540	Right-handed alpha
Helix 61	AG7	C	555	580	Right-handed alpha
Helix 62	AG8	C	583	587	Right-handed 310
Helix 63	AG9	C	588	616	Right-handed alpha
Helix 64	AH1	C	630	634	Right-handed 310
Helix 65	AH2	C	636	656	Right-handed alpha
Helix 66	AH3	C	659	672	Right-handed alpha
Helix 67	AH4	C	682	706	Right-handed alpha
Helix 68	AH5	C	708	742	Right-handed alpha
Helix 69	AH6	C	750	766	Right-handed alpha
Helix 70	AH7	D	14	18	Right-handed alpha
Helix 71	AH8	D	19	21	Right-handed 310
Helix 72	AH9	D	69	74	Right-handed 310
Helix 73	AI1	D	87	95	Right-handed alpha
Helix 74	AI2	D	109	112	Right-handed 310
Helix 75	AI3	D	191	196	Right-handed alpha
Helix 76	AI4	D	201	206	Right-handed alpha
Helix 77	AI5	D	260	281	Right-handed alpha
Helix 78	AI6	D	283	299	Right-handed alpha
Helix 79	AI7	D	308	331	Right-handed alpha
Helix 80	AI8	D	334	347	Right-handed alpha
Helix 81	AI9	D	350	363	Right-handed alpha
Helix 82	AJ1	D	366	381	Right-handed alpha
Helix 83	AJ2	D	384	410	Right-handed alpha
Helix 84	AJ3	D	411	420	Right-handed alpha

There are 14 sheets in PDB entry 8FFW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	21	first strand
Strand 2	B	169	174	anti-parallel
Strand 3	B	159	164	anti-parallel
Strand 4	B	145	153	anti-parallel
Strand 5	B	183	190	anti-parallel
Strand 6	B	88	92	anti-parallel
Strand 7	B	78	83	anti-parallel
Strand 8	B	218	224	parallel
Strand 9	B	284	290	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	289	first strand
Strand 2	A	218	224	anti-parallel
Strand 3	A	78	83	parallel
Strand 4	A	88	92	anti-parallel
Strand 5	A	183	190	anti-parallel
Strand 6	A	145	153	anti-parallel
Strand 7	A	159	164	anti-parallel
Strand 8	A	170	174	anti-parallel
Strand 9	B	18	20	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	110	first strand
Strand 2	B	23	24	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	332	first strand
Strand 2	A	336	344	anti-parallel
Strand 3	A	386	391	anti-parallel
Strand 4	A	361	365	parallel
Strand 5	A	368	371	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	467	first strand
Strand 2	A	518	521	anti-parallel
Strand 3	A	490	495	parallel
Strand 4	A	539	543	parallel
Strand 5	A	535	536	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	586	588	first strand
Strand 2	A	632	636	parallel
Strand 3	A	597	601	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	331	first strand
Strand 2	B	337	344	anti-parallel
Strand 3	B	386	391	anti-parallel
Strand 4	B	361	365	parallel
Strand 5	B	368	371	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	476	first strand
Strand 2	B	464	467	anti-parallel
Strand 3	B	518	521	anti-parallel
Strand 4	B	491	495	parallel
Strand 5	B	539	543	parallel
Strand 6	B	535	536	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	588	first strand
Strand 2	B	632	636	parallel
Strand 3	B	597	601	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	621	624	first strand
Strand 2	C	627	629	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	674	676	first strand
Strand 2	C	769	771	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	25	first strand
Strand 2	D	33	35	anti-parallel
Strand 3	D	105	107	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	40	first strand
Strand 2	D	101	103	anti-parallel
Strand 3	D	128	133	anti-parallel
Strand 4	D	53	61	anti-parallel
Strand 5	D	77	79	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	154	first strand
Strand 2	D	214	219	anti-parallel
Strand 3	D	241	250	anti-parallel
Strand 4	D	168	172	anti-parallel
Strand 5	D	186	188	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FFW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FFW