Analysis of interatomic Contacts of Structural Units in PDB entry:
8FFY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FFY entry

There are 3 chains in PDB entry 8FFY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 186ARG 507
B
 ASN 40PRO 503
C
 G 1 C 74
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8FFY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
204 213Right-handed alpha
Helix 2
AA2
A
220 225Right-handed alpha
Helix 3
AA3
A
233 245Right-handed alpha
Helix 4
AA4
A
245 254Right-handed alpha
Helix 5
AA5
A
266 273Right-handed alpha
Helix 6
AA6
A
299 307Right-handed alpha
Helix 7
AA7
A
360 383Right-handed alpha
Helix 8
AA8
A
427 434Right-handed alpha
Helix 9
AA9
A
457 468Right-handed alpha
Helix 10
AB1
A
481 486Right-handed alpha
Helix 11
AB2
B
42 51Right-handed alpha
Helix 12
AB3
B
59 65Right-handed alpha
Helix 13
AB4
B
66 78Right-handed alpha
Helix 14
AB5
B
85 121Right-handed alpha
Helix 15
AB6
B
132 168Right-handed alpha
Helix 16
AB7
B
204 212Right-handed alpha
Helix 17
AB8
B
220 225Right-handed alpha
Helix 18
AB9
B
233 252Right-handed alpha
Helix 19
AC1
B
265 273Right-handed alpha
Helix 20
AC2
B
299 309Right-handed alpha
Helix 21
AC3
B
360 383Right-handed alpha
Helix 22
AC4
B
427 434Right-handed alpha
Helix 23
AC5
B
457 468Right-handed alpha
Helix 24
AC6
B
481 486Right-handed alpha
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There are 9 sheets in PDB entry 8FFY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 192first strand
Strand 2
A
386 390anti-parallel
Strand 3
A
402 408anti-parallel
Strand 4
A
417 425anti-parallel
Strand 5
A
448 456anti-parallel
Strand 6
A
347 357anti-parallel
Strand 7
A
320 329anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 232first strand
Strand 2
B
256 259anti-parallel
Strand 3
B
320 329parallel
Strand 4
B
347 357anti-parallel
Strand 5
B
448 456anti-parallel
Strand 6
B
415 425anti-parallel
Strand 7
B
402 410anti-parallel
Strand 8
B
386 390anti-parallel
Strand 9
B
187 192anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
B
230 232anti-parallel
Strand 3
B
215 216anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 265first strand
Strand 2
A
294 296anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 446first strand
Strand 2
A
436 438anti-parallel
Strand 3
A
311 313parallel
Strand 4
B
499 500anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 476first strand
Strand 2
A
489 490anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 264first strand
Strand 2
B
295 296anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
436 438first strand
Strand 2
B
444 446anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
475 476first strand
Strand 2
B
489 490anti-parallel
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