Analysis of interatomic Contacts of Structural Units in PDB entry:
8FHD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FHD entry

There are 2 chains in PDB entry 8FHD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 11ALA 1777
C
 GLY 20ALA 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 8FHD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 35Right-handed alpha
Helix 2
AA2
A
66 70Right-handed 310
Helix 3
AA3
A
110 114Right-handed 310
Helix 4
AA4
A
116 120Right-handed 310
Helix 5
AA5
A
121 130Right-handed alpha
Helix 6
AA6
A
131 151Right-handed alpha
Helix 7
AA7
A
155 157Right-handed 310
Helix 8
AA8
A
158 180Right-handed alpha
Helix 9
AA9
A
192 208Right-handed alpha
Helix 10
AB1
A
215 224Right-handed alpha
Helix 11
AB2
A
225 227Right-handed 310
Helix 12
AB3
A
228 234Right-handed alpha
Helix 13
AB4
A
236 250Right-handed alpha
Helix 14
AB5
A
252 273Right-handed alpha
Helix 15
AB6
A
287 291Right-handed 310
Helix 16
AB7
A
355 368Right-handed alpha
Helix 17
AB8
A
371 384Right-handed alpha
Helix 18
AB9
A
387 397Right-handed alpha
Helix 19
AC1
A
400 444Right-handed alpha
Helix 20
AC2
A
738 748Right-handed alpha
Helix 21
AC3
A
752 771Right-handed alpha
Helix 22
AC4
A
778 807Right-handed alpha
Helix 23
AC5
A
819 833Right-handed alpha
Helix 24
AC6
A
839 844Right-handed alpha
Helix 25
AC7
A
845 857Right-handed 310
Helix 26
AC8
A
858 872Right-handed alpha
Helix 27
AC9
A
875 898Right-handed alpha
Helix 28
AD1
A
899 904Right-handed alpha
Helix 29
AD2
A
905 908Right-handed 310
Helix 30
AD3
A
921 935Right-handed alpha
Helix 31
AD4
A
937 949Right-handed alpha
Helix 32
AD5
A
950 980Right-handed alpha
Helix 33
AD6
A
981 984Right-handed 310
Helix 34
AD7
A
995 1007Right-handed alpha
Helix 35
AD8
A
1178 1197Right-handed alpha
Helix 36
AD9
A
1199 1215Right-handed alpha
Helix 37
AE1
A
1219 1224Right-handed 310
Helix 38
AE2
A
1225 1255Right-handed alpha
Helix 39
AE3
A
1255 1261Right-handed alpha
Helix 40
AE4
A
1262 1285Right-handed alpha
Helix 41
AE5
A
1289 1297Right-handed alpha
Helix 42
AE6
A
1298 1302Right-handed 310
Helix 43
AE7
A
1310 1347Right-handed alpha
Helix 44
AE8
A
1372 1380Right-handed alpha
Helix 45
AE9
A
1398 1411Right-handed alpha
Helix 46
AF1
A
1414 1425Right-handed alpha
Helix 47
AF2
A
1437 1439Right-handed 310
Helix 48
AF3
A
1440 1451Right-handed alpha
Helix 49
AF4
A
1453 1475Right-handed alpha
Helix 50
AF5
A
1482 1497Right-handed alpha
Helix 51
AF6
A
1513 1520Right-handed alpha
Helix 52
AF7
A
1521 1539Right-handed alpha
Helix 53
AF8
A
1547 1573Right-handed alpha
Helix 54
AF9
A
1584 1606Right-handed alpha
Helix 55
AG1
A
1614 1621Right-handed alpha
Helix 56
AG2
A
1622 1632Right-handed 310
Helix 57
AG3
A
1634 1673Right-handed alpha
Helix 58
AG4
A
1690 1703Right-handed alpha
Helix 59
AG5
A
1738 1773Right-handed alpha
Helix 60
AG6
C
153 192Right-handed alpha
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There are 6 sheets in PDB entry 8FHD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
103 106anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 283first strand
Strand 2
A
337 341anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1363 1364first strand
Strand 2
A
1354 1358anti-parallel
Strand 3
A
1387 1391anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 31first strand
Strand 2
C
145 147parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 80first strand
Strand 2
C
68 74anti-parallel
Strand 3
C
51 61anti-parallel
Strand 4
C
117 129anti-parallel
Strand 5
C
132 143anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 92first strand
Strand 2
C
106 107anti-parallel
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