Analysis of interatomic Contacts of Structural Units in PDB entry:
8FI9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FI9 entry

There are 8 chains in PDB entry 8FI9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 333	HIS 530
C	THR 333	HIS 530
F	SER 1	PRO 208
G	VAL 2	THR 215
H	GLN 1	THR 215
I	TYR 2	GLN 108
J	GLN 3	VAL 111
K	ASN 334	TRP 353

There are 50 helices in PDB entry 8FI9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	338	343	Right-handed alpha
Helix 2	AA2	A	349	353	Right-handed 310
Helix 3	AA3	A	365	371	Right-handed alpha
Helix 4	AA4	A	384	389	Right-handed 310
Helix 5	AA5	A	405	410	Right-handed 310
Helix 6	AA6	A	416	422	Right-handed alpha
Helix 7	AA7	A	438	443	Right-handed alpha
Helix 8	AA8	A	502	505	Right-handed 310
Helix 9	AA9	C	364	371	Right-handed alpha
Helix 10	AB1	C	384	389	Right-handed 310
Helix 11	AB2	C	405	410	Right-handed 310
Helix 12	AB3	C	416	422	Right-handed alpha
Helix 13	AB4	C	438	443	Right-handed alpha
Helix 14	AB5	F	27	31	Right-handed 310
Helix 15	AB6	F	79	83	Right-handed 310
Helix 16	AB7	F	121	127	Right-handed alpha
Helix 17	AB8	F	181	188	Right-handed alpha
Helix 18	AB9	G	28	32	Right-handed 310
Helix 19	AC1	G	83	87	Right-handed 310
Helix 20	AC2	G	127	132	Right-handed alpha
Helix 21	AC3	G	187	189	Right-handed 310
Helix 22	AC4	H	28	32	Right-handed 310
Helix 23	AC5	H	83	87	Right-handed 310
Helix 24	AC6	H	127	132	Right-handed alpha
Helix 25	AC7	H	187	189	Right-handed 310
Helix 26	AC8	I	27	31	Right-handed 310
Helix 27	AC9	J	28	32	Right-handed 310
Helix 28	AD1	J	83	87	Right-handed 310
Helix 29	AD2	K	338	343	Right-handed alpha
Helix 30	AD3	K	365	370	Right-handed alpha
Helix 31	AD4	K	384	389	Right-handed 310
Helix 32	AD5	K	405	410	Right-handed 310
Helix 33	AD6	K	416	422	Right-handed alpha
Helix 34	AD7	K	438	443	Right-handed alpha
Helix 35	AD8	K	502	505	Right-handed 310
Helix 36	AD9	L	27	31	Right-handed 310
Helix 37	AE1	L	121	127	Right-handed alpha
Helix 38	AE2	L	181	188	Right-handed alpha
Helix 39	AE3	N	27	31	Right-handed 310
Helix 40	AE4	N	79	83	Right-handed 310
Helix 41	AE5	N	121	127	Right-handed alpha
Helix 42	AE6	N	181	188	Right-handed alpha
Helix 43	AE7	O	338	343	Right-handed alpha
Helix 44	AE8	O	365	371	Right-handed alpha
Helix 45	AE9	O	384	389	Right-handed 310
Helix 46	AF1	O	405	410	Right-handed 310
Helix 47	AF2	O	416	422	Right-handed alpha
Helix 48	AF3	O	438	443	Right-handed alpha
Helix 49	AF4	Q	83	87	Right-handed 310
Helix 50	AF5	Q	187	189	Right-handed 310

There are 57 sheets in PDB entry 8FI9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	394	403	anti-parallel
Strand 3	A	507	516	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	376	380	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	524	525	parallel
Strand 3	A	391	392	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	488	489	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	394	403	anti-parallel
Strand 3	C	507	516	anti-parallel
Strand 4	C	431	437	anti-parallel
Strand 5	C	376	380	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	362	first strand
Strand 2	C	524	525	parallel
Strand 3	C	391	392	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	13	first strand
Strand 2	F	103	106	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	21	first strand
Strand 2	F	70	75	anti-parallel
Strand 3	F	62	67	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	48	first strand
Strand 2	F	33	38	anti-parallel
Strand 3	F	85	92	anti-parallel
Strand 4	F	95	98	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	118	first strand
Strand 2	F	130	139	anti-parallel
Strand 3	F	172	180	anti-parallel
Strand 4	F	159	161	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	118	first strand
Strand 2	F	130	139	anti-parallel
Strand 3	F	172	180	anti-parallel
Strand 4	F	165	166	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	155	first strand
Strand 2	F	145	150	anti-parallel
Strand 3	F	191	197	anti-parallel
Strand 4	F	200	206	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	77	82	anti-parallel
Strand 4	G	67	72	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	59	first strand
Strand 2	G	45	51	anti-parallel
Strand 3	G	33	39	anti-parallel
Strand 4	G	88	97	anti-parallel
Strand 5	G	100	103	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	59	first strand
Strand 2	G	45	51	anti-parallel
Strand 3	G	33	39	anti-parallel
Strand 4	G	88	97	anti-parallel
Strand 5	G	107	109	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	124	first strand
Strand 2	G	135	145	anti-parallel
Strand 3	G	176	185	anti-parallel
Strand 4	G	163	165	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	124	first strand
Strand 2	G	135	145	anti-parallel
Strand 3	G	176	185	anti-parallel
Strand 4	G	169	170	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	151	154	first strand
Strand 2	G	195	200	anti-parallel
Strand 3	G	205	210	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	88	95	anti-parallel
Strand 5	H	100	103	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	88	95	anti-parallel
Strand 5	H	107	109	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	135	145	anti-parallel
Strand 3	H	176	185	anti-parallel
Strand 4	H	163	165	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	135	145	anti-parallel
Strand 3	H	176	185	anti-parallel
Strand 4	H	169	170	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	154	first strand
Strand 2	H	194	200	anti-parallel
Strand 3	H	205	211	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	13	first strand
Strand 2	I	102	106	parallel
Strand 3	I	85	92	anti-parallel
Strand 4	I	34	38	anti-parallel
Strand 5	I	45	48	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	13	first strand
Strand 2	I	102	106	parallel
Strand 3	I	85	92	anti-parallel
Strand 4	I	95	98	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	19	24	first strand
Strand 2	I	70	75	anti-parallel
Strand 3	I	62	67	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	6	first strand
Strand 2	J	18	24	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	67	72	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	57	59	first strand
Strand 2	J	45	51	anti-parallel
Strand 3	J	33	39	anti-parallel
Strand 4	J	88	97	anti-parallel
Strand 5	J	100	103	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	57	59	first strand
Strand 2	J	45	51	anti-parallel
Strand 3	J	33	39	anti-parallel
Strand 4	J	88	97	anti-parallel
Strand 5	J	107	109	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	354	358	first strand
Strand 2	K	394	403	anti-parallel
Strand 3	K	507	516	anti-parallel
Strand 4	K	431	437	anti-parallel
Strand 5	K	376	380	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	361	362	first strand
Strand 2	K	524	525	parallel
Strand 3	K	391	392	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	452	454	first strand
Strand 2	K	492	494	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	473	474	first strand
Strand 2	K	488	489	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	13	first strand
Strand 2	L	105	106	parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	24	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	62	67	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	44	48	first strand
Strand 2	L	33	38	anti-parallel
Strand 3	L	85	92	anti-parallel
Strand 4	L	95	98	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	130	139	anti-parallel
Strand 3	L	172	180	anti-parallel
Strand 4	L	159	161	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	130	139	anti-parallel
Strand 3	L	172	180	anti-parallel
Strand 4	L	165	166	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	155	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	200	206	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	9	13	first strand
Strand 2	N	102	106	parallel
Strand 3	N	85	92	anti-parallel
Strand 4	N	33	38	anti-parallel
Strand 5	N	44	48	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	9	13	first strand
Strand 2	N	102	106	parallel
Strand 3	N	85	92	anti-parallel
Strand 4	N	95	98	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	19	24	first strand
Strand 2	N	70	75	anti-parallel
Strand 3	N	62	67	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	114	118	first strand
Strand 2	N	130	139	anti-parallel
Strand 3	N	172	180	anti-parallel
Strand 4	N	159	161	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	114	118	first strand
Strand 2	N	130	139	anti-parallel
Strand 3	N	172	180	anti-parallel
Strand 4	N	165	166	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	153	155	first strand
Strand 2	N	144	150	anti-parallel
Strand 3	N	191	197	anti-parallel
Strand 4	N	200	206	anti-parallel

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There are 5 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	354	358	first strand
Strand 2	O	394	403	anti-parallel
Strand 3	O	507	516	anti-parallel
Strand 4	O	431	437	anti-parallel
Strand 5	O	376	380	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	361	362	first strand
Strand 2	O	524	525	parallel
Strand 3	O	391	392	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	452	454	first strand
Strand 2	O	492	494	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	473	474	first strand
Strand 2	O	488	489	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	3	6	first strand
Strand 2	Q	18	25	anti-parallel
Strand 3	Q	77	82	anti-parallel
Strand 4	Q	67	72	anti-parallel

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There are 5 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	57	59	first strand
Strand 2	Q	45	51	anti-parallel
Strand 3	Q	33	39	anti-parallel
Strand 4	Q	88	97	anti-parallel
Strand 5	Q	100	103	anti-parallel

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There are 5 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	57	59	first strand
Strand 2	Q	45	51	anti-parallel
Strand 3	Q	33	39	anti-parallel
Strand 4	Q	88	97	anti-parallel
Strand 5	Q	107	109	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	120	124	first strand
Strand 2	Q	135	145	anti-parallel
Strand 3	Q	176	185	anti-parallel
Strand 4	Q	163	165	anti-parallel

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There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	120	124	first strand
Strand 2	Q	135	145	anti-parallel
Strand 3	Q	176	185	anti-parallel
Strand 4	Q	169	170	anti-parallel

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There are 3 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	151	154	first strand
Strand 2	Q	195	200	anti-parallel
Strand 3	Q	205	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FI9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FI9