Analysis of interatomic Contacts of Structural Units in PDB entry:
8FID


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FID entry

There is 1 chain in PDB entry 8FID (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 16ASP 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8FID. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 23Right-handed alpha
Helix 2
AA2
A
24 27Right-handed 310
Helix 3
AA3
A
30 41Right-handed alpha
Helix 4
AA4
A
55 65Right-handed alpha
Helix 5
AA5
A
74 82Right-handed alpha
Helix 6
AA6
A
83 87Right-handed 310
Helix 7
AA7
A
88 96Right-handed alpha
Helix 8
AA8
A
97 101Right-handed 310
Helix 9
AA9
A
104 114Right-handed alpha
Helix 10
AB1
A
115 117Right-handed 310
Helix 11
AB2
A
118 124Right-handed alpha
Helix 12
AB3
A
125 146Right-handed alpha
Helix 13
AB4
A
152 156Right-handed alpha
Helix 14
AB5
A
158 170Right-handed alpha
Helix 15
AB6
A
172 189Right-handed alpha
Helix 16
AB7
A
195 223Right-handed alpha
Helix 17
AB8
A
227 239Right-handed alpha
Helix 18
AB9
A
244 259Right-handed alpha
Helix 19
AC1
A
260 277Right-handed alpha
Helix 20
AC2
A
278 286Right-handed 310
Helix 21
AC3
A
287 302Right-handed alpha
Helix 22
AC4
A
334 340Right-handed alpha
Helix 23
AC5
A
352 357Right-handed 310
Helix 24
AC6
A
375 379Right-handed 310
Helix 25
AC7
A
382 401Right-handed alpha
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There are 4 sheets in PDB entry 8FID. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
51 53anti-parallel
Strand 3
A
330 333parallel
Strand 4
A
312 314anti-parallel
Strand 5
A
70 71anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
425 428anti-parallel
Strand 3
A
404 406anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 320first strand
Strand 2
A
323 325anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 412first strand
Strand 2
A
421 423anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il