Analysis of interatomic Contacts of Structural Units in PDB entry:
8FIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FIP entry

There are 2 chains in PDB entry 8FIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 8TYR 345
B
 THR 8TYR 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8FIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 34Right-handed alpha
Helix 2
AA2
A
47 52Right-handed alpha
Helix 3
AA3
A
53 58Right-handed alpha
Helix 4
AA4
A
76 81Right-handed alpha
Helix 5
AA5
A
99 104Right-handed alpha
Helix 6
AA6
A
104 123Right-handed alpha
Helix 7
AA7
A
133 137Right-handed 310
Helix 8
AA8
A
157 165Right-handed alpha
Helix 9
AA9
A
168 190Right-handed alpha
Helix 10
AB1
A
211 218Right-handed alpha
Helix 11
AB2
A
218 223Right-handed alpha
Helix 12
AB3
A
224 239Right-handed alpha
Helix 13
AB4
A
246 259Right-handed alpha
Helix 14
AB5
A
274 286Right-handed alpha
Helix 15
AB6
A
311 317Right-handed alpha
Helix 16
AB7
A
325 330Right-handed alpha
Helix 17
AB8
A
332 340Right-handed alpha
Helix 18
AB9
B
21 34Right-handed alpha
Helix 19
AC1
B
47 52Right-handed alpha
Helix 20
AC2
B
53 58Right-handed alpha
Helix 21
AC3
B
76 81Right-handed alpha
Helix 22
AC4
B
99 104Right-handed alpha
Helix 23
AC5
B
104 123Right-handed alpha
Helix 24
AC6
B
133 137Right-handed 310
Helix 25
AC7
B
157 165Right-handed alpha
Helix 26
AC8
B
168 189Right-handed alpha
Helix 27
AC9
B
211 218Right-handed alpha
Helix 28
AD1
B
218 223Right-handed alpha
Helix 29
AD2
B
224 239Right-handed alpha
Helix 30
AD3
B
246 259Right-handed alpha
Helix 31
AD4
B
274 286Right-handed alpha
Helix 32
AD5
B
287 290Right-handed 310
Helix 33
AD6
B
311 317Right-handed alpha
Helix 34
AD7
B
325 330Right-handed alpha
Helix 35
AD8
B
332 340Right-handed alpha
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There are 6 sheets in PDB entry 8FIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
37 42parallel
Strand 3
A
13 17parallel
Strand 4
A
85 88parallel
Strand 5
A
127 131parallel
Strand 6
A
192 198parallel
Strand 7
A
264 268parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 150first strand
Strand 2
A
307 309parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 202first strand
Strand 2
A
241 245parallel
Strand 3
A
271 273anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 67first strand
Strand 2
B
37 42parallel
Strand 3
B
13 17parallel
Strand 4
B
85 88parallel
Strand 5
B
127 131parallel
Strand 6
B
192 198parallel
Strand 7
B
264 268parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 150first strand
Strand 2
B
307 309parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 202first strand
Strand 2
B
241 245parallel
Strand 3
B
271 273anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il