Analysis of interatomic Contacts of Structural Units in PDB entry:
8FIR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FIR entry

There are 2 chains in PDB entry 8FIR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 333
B
 MET 1SER 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8FIR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 15Right-handed alpha
Helix 2
AA2
A
25 39Right-handed alpha
Helix 3
AA3
A
49 61Right-handed alpha
Helix 4
AA4
A
77 90Right-handed alpha
Helix 5
AA5
A
91 93Right-handed 310
Helix 6
AA6
A
95 103Right-handed alpha
Helix 7
AA7
A
105 116Right-handed alpha
Helix 8
AA8
A
129 141Right-handed alpha
Helix 9
AA9
A
182 201Right-handed alpha
Helix 10
AB1
A
222 239Right-handed alpha
Helix 11
AB2
A
249 255Right-handed alpha
Helix 12
AB3
A
255 263Right-handed alpha
Helix 13
AB4
A
279 293Right-handed alpha
Helix 14
AB5
A
318 333Right-handed alpha
Helix 15
AB6
B
2 15Right-handed alpha
Helix 16
AB7
B
25 38Right-handed alpha
Helix 17
AB8
B
49 61Right-handed alpha
Helix 18
AB9
B
77 90Right-handed alpha
Helix 19
AC1
B
91 93Right-handed 310
Helix 20
AC2
B
95 103Right-handed alpha
Helix 21
AC3
B
105 116Right-handed alpha
Helix 22
AC4
B
129 141Right-handed alpha
Helix 23
AC5
B
160 164Right-handed 310
Helix 24
AC6
B
182 201Right-handed alpha
Helix 25
AC7
B
222 238Right-handed alpha
Helix 26
AC8
B
249 255Right-handed alpha
Helix 27
AC9
B
255 263Right-handed alpha
Helix 28
AD1
B
279 294Right-handed alpha
Helix 29
AD2
B
318 333Right-handed alpha
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There are 4 sheets in PDB entry 8FIR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
43 47parallel
Strand 3
A
17 20parallel
Strand 4
A
121 124parallel
Strand 5
A
310 312parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 248first strand
Strand 2
A
206 210parallel
Strand 3
A
274 276parallel
Strand 4
A
169 173parallel
Strand 5
A
151 157anti-parallel
Strand 6
A
297 304anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 70first strand
Strand 2
B
43 47parallel
Strand 3
B
17 20parallel
Strand 4
B
121 124parallel
Strand 5
B
310 312parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 248first strand
Strand 2
B
206 210parallel
Strand 3
B
274 276parallel
Strand 4
B
169 173parallel
Strand 5
B
151 157anti-parallel
Strand 6
B
297 304anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il