Analysis of interatomic Contacts of Structural Units in PDB entry:
8FIS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FIS entry

There are 11 chains in PDB entry 8FIS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 520	ASP 664
B	LEU 520	ASP 664
C	GLU 32	VAL 505
E	LEU 520	ASP 664
F	GLU 32	VAL 505
G	GLU 32	VAL 505
J	GLU 1	SER 112
I	GLU 1	SER 112
H	GLN 1	ASP 100
H	ASP 100	SER 112
L	GLU 1	LEU 1106

There are 55 helices in PDB entry 8FIS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	523	527	Right-handed 310
Helix 2	AA2	A	529	534	Right-handed alpha
Helix 3	AA3	A	537	543	Right-handed alpha
Helix 4	AA4	A	571	596	Right-handed alpha
Helix 5	AA5	A	611	616	Right-handed alpha
Helix 6	AA6	A	618	626	Right-handed alpha
Helix 7	AA7	A	627	636	Right-handed alpha
Helix 8	AA8	A	641	661	Right-handed alpha
Helix 9	AA9	B	529	534	Right-handed alpha
Helix 10	AB1	B	537	543	Right-handed alpha
Helix 11	AB2	B	569	595	Right-handed alpha
Helix 12	AB3	B	611	615	Right-handed 310
Helix 13	AB4	B	620	625	Right-handed alpha
Helix 14	AB5	B	627	635	Right-handed alpha
Helix 15	AB6	B	638	661	Right-handed alpha
Helix 16	AB7	C	101	116	Right-handed alpha
Helix 17	AB8	C	122	126	Right-handed 310
Helix 18	AB9	C	195	197	Right-handed 310
Helix 19	AC1	C	335	354	Right-handed alpha
Helix 20	AC2	C	368	373	Right-handed alpha
Helix 21	AC3	C	475	481	Right-handed alpha
Helix 22	AC4	E	523	527	Right-handed 310
Helix 23	AC5	E	529	534	Right-handed alpha
Helix 24	AC6	E	537	542	Right-handed alpha
Helix 25	AC7	E	570	596	Right-handed alpha
Helix 26	AC8	E	611	616	Right-handed alpha
Helix 27	AC9	E	618	625	Right-handed alpha
Helix 28	AD1	E	627	635	Right-handed alpha
Helix 29	AD2	E	639	655	Right-handed alpha
Helix 30	AD3	E	656	660	Right-handed 310
Helix 31	AD4	F	58	65	Right-handed alpha
Helix 32	AD5	F	101	115	Right-handed alpha
Helix 33	AD6	F	122	126	Right-handed 310
Helix 34	AD7	F	139	151	Right-handed 310
Helix 35	AD8	F	335	354	Right-handed alpha
Helix 36	AD9	F	368	373	Right-handed alpha
Helix 37	AE1	F	475	484	Right-handed alpha
Helix 38	AE2	G	57	61	Right-handed 310
Helix 39	AE3	G	101	117	Right-handed alpha
Helix 40	AE4	G	335	354	Right-handed alpha
Helix 41	AE5	G	368	373	Right-handed alpha
Helix 42	AE6	G	387	390	Right-handed 310
Helix 43	AE7	G	475	481	Right-handed alpha
Helix 44	AE8	J	28	32	Right-handed 310
Helix 45	AE9	J	61	64	Right-handed 310
Helix 46	AF1	J	83	87	Right-handed 310
Helix 47	AF2	J	100	100	Right-handed 310
Helix 48	AF3	I	28	32	Right-handed 310
Helix 49	AF4	I	83	87	Right-handed 310
Helix 50	AF5	I	100	100	Right-handed 310
Helix 51	AF6	H	61	64	Right-handed 310
Helix 52	AF7	H	83	87	Right-handed 310
Helix 53	AF8	L	28	32	Right-handed 310
Helix 54	AF9	L	83	87	Right-handed 310
Helix 55	AG1	L	1079	1083	Right-handed 310

There are 40 sheets in PDB entry 8FIS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	603	609	first strand
Strand 2	C	35	39	anti-parallel
Strand 3	C	495	499	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	603	609	first strand
Strand 2	G	35	39	anti-parallel
Strand 3	G	495	499	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	486	491	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	84	86	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	76	first strand
Strand 2	C	53	56	parallel
Strand 3	C	216	218	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	94	first strand
Strand 2	C	236	237	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	177	first strand
Strand 2	C	154	162	anti-parallel
Strand 3	C	129	133	anti-parallel
Strand 4	C	190	193	anti-parallel
Strand 5	C	181	183	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	203	first strand
Strand 2	C	433	435	parallel
Strand 3	C	423	425	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	273	first strand
Strand 2	C	284	302	anti-parallel
Strand 3	C	330	334	anti-parallel
Strand 4	C	413	421	anti-parallel
Strand 5	C	381	385	anti-parallel
Strand 6	C	374	378	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	273	first strand
Strand 2	C	284	302	anti-parallel
Strand 3	C	441	456	anti-parallel
Strand 4	C	465	470	anti-parallel
Strand 5	C	358	361	parallel
Strand 6	C	393	395	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	308	first strand
Strand 2	C	316	320	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	603	604	first strand
Strand 2	F	35	39	anti-parallel
Strand 3	F	495	499	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	47	first strand
Strand 2	F	486	491	anti-parallel
Strand 3	F	223	228	anti-parallel
Strand 4	F	242	245	anti-parallel
Strand 5	F	83	85	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	76	first strand
Strand 2	F	53	56	parallel
Strand 3	F	216	218	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	94	first strand
Strand 2	F	236	239	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	177	first strand
Strand 2	F	154	162	anti-parallel
Strand 3	F	129	133	anti-parallel
Strand 4	F	190	193	anti-parallel
Strand 5	F	181	183	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	271	274	first strand
Strand 2	F	284	298	anti-parallel
Strand 3	F	330	334	anti-parallel
Strand 4	F	413	421	anti-parallel
Strand 5	F	381	385	anti-parallel
Strand 6	F	374	378	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	271	274	first strand
Strand 2	F	284	298	anti-parallel
Strand 3	F	443	456	anti-parallel
Strand 4	F	465	470	anti-parallel
Strand 5	F	358	361	parallel
Strand 6	F	393	395	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	301	312	first strand
Strand 2	F	315	323	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	423	425	first strand
Strand 2	F	433	435	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	486	491	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel
Strand 5	G	84	86	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	76	first strand
Strand 2	G	53	56	parallel
Strand 3	G	216	218	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	94	first strand
Strand 2	G	236	239	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	181	183	first strand
Strand 2	G	190	193	anti-parallel
Strand 3	G	129	133	anti-parallel
Strand 4	G	154	162	anti-parallel
Strand 5	G	168	177	anti-parallel
Strand 6	H	100	100	anti-parallel
Strand 7	H	100	100	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	273	first strand
Strand 2	G	284	312	anti-parallel
Strand 3	G	329	334	anti-parallel
Strand 4	G	413	421	anti-parallel
Strand 5	G	381	385	anti-parallel
Strand 6	G	374	378	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	315	323	first strand
Strand 2	G	284	312	anti-parallel
Strand 3	G	441	456	anti-parallel
Strand 4	G	465	470	anti-parallel
Strand 5	G	358	361	parallel
Strand 6	G	393	395	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	423	425	first strand
Strand 2	G	433	435	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	6	first strand
Strand 2	J	17	24	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	68	72	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	57	59	first strand
Strand 2	J	46	51	anti-parallel
Strand 3	J	34	39	anti-parallel
Strand 4	J	88	95	anti-parallel
Strand 5	J	100	103	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	57	59	first strand
Strand 2	J	46	51	anti-parallel
Strand 3	J	34	39	anti-parallel
Strand 4	J	88	95	anti-parallel
Strand 5	J	107	109	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	17	24	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	67	72	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	108	111	parallel
Strand 3	I	88	95	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	46	51	anti-parallel
Strand 6	I	57	59	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	108	111	parallel
Strand 3	I	88	95	anti-parallel
Strand 4	I	100	102	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	94	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	17	24	anti-parallel
Strand 3	L	77	82	anti-parallel
Strand 4	L	69	72	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	57	59	first strand
Strand 2	L	46	51	anti-parallel
Strand 3	L	34	39	anti-parallel
Strand 4	L	88	95	anti-parallel
Strand 5	L	100	103	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	57	59	first strand
Strand 2	L	46	51	anti-parallel
Strand 3	L	34	39	anti-parallel
Strand 4	L	88	95	anti-parallel
Strand 5	L	108	109	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1009	1013	first strand
Strand 2	L	1102	1106	parallel
Strand 3	L	1085	1090	anti-parallel
Strand 4	L	1033	1038	anti-parallel
Strand 5	L	1044	1048	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1009	1013	first strand
Strand 2	L	1102	1106	parallel
Strand 3	L	1085	1090	anti-parallel
Strand 4	L	1097	1098	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1019	1024	first strand
Strand 2	L	1070	1075	anti-parallel
Strand 3	L	1062	1067	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FIS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FIS