Analysis of interatomic Contacts of Structural Units in PDB entry:
8FJ9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FJ9 entry

There are 2 chains in PDB entry 8FJ9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 208	ILE 1047
B	VAL 212	SER 1048

There are 65 helices in PDB entry 8FJ9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	219	224	Right-handed alpha
Helix 2	AA2	A	254	256	Right-handed 310
Helix 3	AA3	A	270	272	Right-handed 310
Helix 4	AA4	A	276	292	Right-handed alpha
Helix 5	AA5	A	302	324	Right-handed alpha
Helix 6	AA6	A	327	339	Right-handed alpha
Helix 7	AA7	A	340	349	Right-handed 310
Helix 8	AA8	A	370	374	Right-handed 310
Helix 9	AA9	A	416	432	Right-handed alpha
Helix 10	AB1	A	432	439	Right-handed alpha
Helix 11	AB2	A	452	457	Right-handed 310
Helix 12	AB3	A	458	473	Right-handed alpha
Helix 13	AB4	A	477	483	Right-handed alpha
Helix 14	AB5	A	494	503	Right-handed alpha
Helix 15	AB6	A	510	522	Right-handed alpha
Helix 16	AB7	A	532	537	Right-handed alpha
Helix 17	AB8	A	565	577	Right-handed alpha
Helix 18	AB9	A	587	602	Right-handed alpha
Helix 19	AC1	A	613	622	Right-handed alpha
Helix 20	AC2	A	633	637	Right-handed alpha
Helix 21	AC3	A	650	665	Right-handed alpha
Helix 22	AC4	A	699	704	Right-handed alpha
Helix 23	AC5	A	730	734	Right-handed 310
Helix 24	AC6	A	755	762	Right-handed 310
Helix 25	AC7	A	822	827	Right-handed alpha
Helix 26	AC8	A	843	846	Right-handed 310
Helix 27	AC9	A	847	855	Right-handed alpha
Helix 28	AD1	A	855	862	Right-handed alpha
Helix 29	AD2	A	881	886	Right-handed alpha
Helix 30	AD3	A	908	922	Right-handed alpha
Helix 31	AD4	A	976	982	Right-handed alpha
Helix 32	AD5	A	985	993	Right-handed alpha
Helix 33	AD6	A	994	999	Right-handed alpha
Helix 34	AD7	A	1018	1020	Right-handed 310
Helix 35	AD8	B	270	272	Right-handed 310
Helix 36	AD9	B	276	291	Right-handed alpha
Helix 37	AE1	B	302	324	Right-handed alpha
Helix 38	AE2	B	327	339	Right-handed alpha
Helix 39	AE3	B	340	349	Right-handed 310
Helix 40	AE4	B	370	374	Right-handed 310
Helix 41	AE5	B	416	432	Right-handed alpha
Helix 42	AE6	B	432	439	Right-handed alpha
Helix 43	AE7	B	452	457	Right-handed 310
Helix 44	AE8	B	458	473	Right-handed alpha
Helix 45	AE9	B	477	484	Right-handed alpha
Helix 46	AF1	B	494	503	Right-handed alpha
Helix 47	AF2	B	510	522	Right-handed alpha
Helix 48	AF3	B	532	537	Right-handed alpha
Helix 49	AF4	B	565	577	Right-handed alpha
Helix 50	AF5	B	587	604	Right-handed alpha
Helix 51	AF6	B	613	622	Right-handed alpha
Helix 52	AF7	B	633	637	Right-handed alpha
Helix 53	AF8	B	650	665	Right-handed alpha
Helix 54	AF9	B	699	704	Right-handed alpha
Helix 55	AG1	B	755	762	Right-handed 310
Helix 56	AG2	B	822	827	Right-handed alpha
Helix 57	AG3	B	843	846	Right-handed 310
Helix 58	AG4	B	847	855	Right-handed alpha
Helix 59	AG5	B	855	862	Right-handed alpha
Helix 60	AG6	B	881	886	Right-handed alpha
Helix 61	AG7	B	908	921	Right-handed alpha
Helix 62	AG8	B	976	982	Right-handed alpha
Helix 63	AG9	B	985	993	Right-handed alpha
Helix 64	AH1	B	994	999	Right-handed alpha
Helix 65	AH2	B	1018	1020	Right-handed 310

There are 15 sheets in PDB entry 8FJ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	A	267	268	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	253	first strand
Strand 2	A	257	259	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	934	935	first strand
Strand 2	A	410	412	anti-parallel
Strand 3	A	1022	1026	anti-parallel
Strand 4	A	360	363	anti-parallel
Strand 5	A	940	949	anti-parallel
Strand 6	A	962	971	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	487	488	first strand
Strand 2	A	447	450	parallel
Strand 3	A	925	930	parallel
Strand 4	A	866	868	parallel
Strand 5	A	830	832	parallel
Strand 6	A	628	632	parallel
Strand 7	A	554	556	parallel
Strand 8	A	508	509	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	545	first strand
Strand 2	A	669	676	anti-parallel
Strand 3	A	679	686	anti-parallel
Strand 4	A	707	712	anti-parallel
Strand 5	A	787	795	anti-parallel
Strand 6	A	737	744	anti-parallel
Strand 7	A	763	764	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	749	751	first strand
Strand 2	A	737	744	anti-parallel
Strand 3	A	787	795	anti-parallel
Strand 4	A	781	782	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	725	728	first strand
Strand 2	A	770	773	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1037	1038	first strand
Strand 2	A	1043	1044	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	246	first strand
Strand 2	B	267	268	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	934	935	first strand
Strand 2	B	410	412	anti-parallel
Strand 3	B	1022	1026	anti-parallel
Strand 4	B	360	363	anti-parallel
Strand 5	B	940	949	anti-parallel
Strand 6	B	962	971	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	487	488	first strand
Strand 2	B	447	450	parallel
Strand 3	B	925	930	parallel
Strand 4	B	866	868	parallel
Strand 5	B	830	832	parallel
Strand 6	B	628	632	parallel
Strand 7	B	554	556	parallel
Strand 8	B	508	509	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	545	first strand
Strand 2	B	669	676	anti-parallel
Strand 3	B	679	686	anti-parallel
Strand 4	B	707	712	anti-parallel
Strand 5	B	787	795	anti-parallel
Strand 6	B	737	744	anti-parallel
Strand 7	B	763	764	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	749	751	first strand
Strand 2	B	737	744	anti-parallel
Strand 3	B	787	795	anti-parallel
Strand 4	B	781	782	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	725	728	first strand
Strand 2	B	770	773	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1037	1038	first strand
Strand 2	B	1043	1044	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FJ9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FJ9