Analysis of interatomic Contacts of Structural Units in PDB entry:
8FJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FJD entry

There are 2 chains in PDB entry 8FJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 23GLU 320
B
 ALA 22VAL 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8FJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
74 77Right-handed 310
Helix 2
AA2
A
78 88Right-handed alpha
Helix 3
AA3
A
106 128Right-handed alpha
Helix 4
AA4
A
145 157Right-handed alpha
Helix 5
AA5
A
226 234Right-handed alpha
Helix 6
AA6
A
260 264Right-handed 310
Helix 7
AA7
A
270 292Right-handed alpha
Helix 8
AA8
A
295 303Right-handed alpha
Helix 9
AA9
A
304 307Right-handed 310
Helix 10
AB1
B
74 77Right-handed 310
Helix 11
AB2
B
78 88Right-handed alpha
Helix 12
AB3
B
106 128Right-handed alpha
Helix 13
AB4
B
145 156Right-handed alpha
Helix 14
AB5
B
208 210Right-handed 310
Helix 15
AB6
B
226 233Right-handed alpha
Helix 16
AB7
B
257 262Right-handed alpha
Helix 17
AB8
B
270 288Right-handed alpha
Helix 18
AB9
B
295 303Right-handed alpha
Helix 19
AC1
B
304 307Right-handed 310
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There are 4 sheets in PDB entry 8FJD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
51 56anti-parallel
Strand 3
A
91 95anti-parallel
Strand 4
A
60 68parallel
Strand 5
A
132 144parallel
Strand 6
A
168 171parallel
Strand 7
A
201 206parallel
Strand 8
A
238 243parallel
Strand 9
A
311 317anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 178first strand
Strand 2
A
181 182anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 39first strand
Strand 2
B
51 56anti-parallel
Strand 3
B
91 95anti-parallel
Strand 4
B
60 68parallel
Strand 5
B
132 144parallel
Strand 6
B
168 171parallel
Strand 7
B
201 206parallel
Strand 8
B
238 243parallel
Strand 9
B
311 317anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 178first strand
Strand 2
B
181 182anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il