Analysis of interatomic Contacts of Structural Units in PDB entry:
8FJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FJM entry

There are 2 chains in PDB entry 8FJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 45ARG 295
B
 LYS 44ARG 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8FJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
78 93Right-handed alpha
Helix 2
AA2
A
104 108Right-handed 310
Helix 3
AA3
A
113 124Right-handed alpha
Helix 4
AA4
A
140 151Right-handed alpha
Helix 5
AA5
A
160 183Right-handed alpha
Helix 6
AA6
A
195 201Right-handed alpha
Helix 7
AA7
A
206 210Right-handed 310
Helix 8
AA8
A
223 234Right-handed alpha
Helix 9
AA9
A
235 237Right-handed 310
Helix 10
AB1
A
256 261Right-handed alpha
Helix 11
AB2
A
261 267Right-handed alpha
Helix 12
AB3
B
78 93Right-handed alpha
Helix 13
AB4
B
113 124Right-handed alpha
Helix 14
AB5
B
140 151Right-handed alpha
Helix 15
AB6
B
160 183Right-handed alpha
Helix 16
AB7
B
195 201Right-handed alpha
Helix 17
AB8
B
206 210Right-handed 310
Helix 18
AB9
B
223 235Right-handed alpha
Helix 19
AC1
B
256 261Right-handed alpha
Helix 20
AC2
B
261 267Right-handed alpha
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There are 2 sheets in PDB entry 8FJM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 193first strand
Strand 2
A
153 158parallel
Strand 3
A
131 135parallel
Strand 4
A
213 217parallel
Strand 5
A
242 245parallel
Strand 6
A
287 294anti-parallel
Strand 7
A
268 275anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 193first strand
Strand 2
B
153 158parallel
Strand 3
B
131 135parallel
Strand 4
B
213 217parallel
Strand 5
B
242 245parallel
Strand 6
B
287 294anti-parallel
Strand 7
B
268 275anti-parallel
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