Analysis of interatomic Contacts of Structural Units in PDB entry:
8FK0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FK0 entry

There are 14 chains in PDB entry 8FK0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 1	SER 132
B	LEU 1	SER 132
C	LEU 1	SER 132
I	LEU 1	SER 132
D	LEU 1	SER 132
J	LEU 1	SER 132
E	LEU 1	SER 132
K	LEU 1	SER 132
F	LEU 1	SER 132
L	LEU 1	SER 132
G	LEU 1	SER 132
M	LEU 1	SER 132
H	LEU 1	SER 132
N	LEU 1	SER 132

There are 24 helices in PDB entry 8FK0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	34	Right-handed alpha
Helix 2	AA2	A	102	108	Right-handed 310
Helix 3	AA3	B	2	34	Right-handed alpha
Helix 4	AA4	B	102	108	Right-handed 310
Helix 5	AA5	C	2	34	Right-handed alpha
Helix 6	AA6	I	2	34	Right-handed alpha
Helix 7	AA7	D	2	34	Right-handed alpha
Helix 8	AA8	D	103	108	Right-handed 310
Helix 9	AA9	J	2	34	Right-handed alpha
Helix 10	AB1	J	102	108	Right-handed 310
Helix 11	AB2	E	2	34	Right-handed alpha
Helix 12	AB3	E	103	108	Right-handed 310
Helix 13	AB4	K	2	34	Right-handed alpha
Helix 14	AB5	K	102	106	Right-handed 310
Helix 15	AB6	F	2	34	Right-handed alpha
Helix 16	AB7	F	103	108	Right-handed 310
Helix 17	AB8	L	2	34	Right-handed alpha
Helix 18	AB9	G	2	34	Right-handed alpha
Helix 19	AC1	G	104	108	Right-handed 310
Helix 20	AC2	M	2	34	Right-handed alpha
Helix 21	AC3	M	103	108	Right-handed 310
Helix 22	AC4	H	2	34	Right-handed alpha
Helix 23	AC5	H	103	108	Right-handed 310
Helix 24	AC6	N	2	34	Right-handed alpha

There are 27 sheets in PDB entry 8FK0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	52	59	anti-parallel
Strand 3	A	89	96	anti-parallel
Strand 4	A	75	78	anti-parallel
Strand 5	A	66	70	anti-parallel
Strand 6	A	111	118	anti-parallel
Strand 7	A	123	131	anti-parallel
Strand 8	A	44	47	parallel
Strand 9	A	52	59	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	52	59	anti-parallel
Strand 3	B	44	47	anti-parallel
Strand 4	B	127	131	parallel
Strand 5	B	111	113	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	52	59	anti-parallel
Strand 3	B	89	96	anti-parallel
Strand 4	B	75	78	anti-parallel
Strand 5	B	66	70	anti-parallel
Strand 6	B	115	118	anti-parallel
Strand 7	B	122	124	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	40	first strand
Strand 2	C	52	59	anti-parallel
Strand 3	C	44	47	anti-parallel
Strand 4	C	123	131	parallel
Strand 5	C	110	118	anti-parallel
Strand 6	C	66	70	anti-parallel
Strand 7	C	75	76	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	40	first strand
Strand 2	C	52	59	anti-parallel
Strand 3	C	89	94	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	38	40	first strand
Strand 2	I	52	59	anti-parallel
Strand 3	I	44	47	anti-parallel
Strand 4	I	122	131	parallel
Strand 5	I	111	118	anti-parallel
Strand 6	I	64	70	anti-parallel
Strand 7	I	83	84	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	38	40	first strand
Strand 2	I	52	59	anti-parallel
Strand 3	I	87	96	anti-parallel
Strand 4	I	76	78	anti-parallel
Strand 5	I	64	70	anti-parallel
Strand 6	I	83	84	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	40	first strand
Strand 2	D	52	59	anti-parallel
Strand 3	D	44	47	anti-parallel
Strand 4	D	123	131	parallel
Strand 5	D	111	118	anti-parallel
Strand 6	D	64	70	anti-parallel
Strand 7	D	83	84	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	40	first strand
Strand 2	D	52	59	anti-parallel
Strand 3	D	89	96	anti-parallel
Strand 4	D	75	78	anti-parallel
Strand 5	D	64	70	anti-parallel
Strand 6	D	83	84	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	38	40	first strand
Strand 2	J	52	59	anti-parallel
Strand 3	J	44	47	anti-parallel
Strand 4	J	122	131	parallel
Strand 5	J	111	118	anti-parallel
Strand 6	J	64	70	anti-parallel
Strand 7	J	83	84	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	38	40	first strand
Strand 2	J	52	59	anti-parallel
Strand 3	J	87	96	anti-parallel
Strand 4	J	75	78	anti-parallel
Strand 5	J	64	70	anti-parallel
Strand 6	J	83	84	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	40	first strand
Strand 2	E	52	59	anti-parallel
Strand 3	E	44	47	anti-parallel
Strand 4	E	123	131	parallel
Strand 5	E	111	118	anti-parallel
Strand 6	E	66	70	anti-parallel
Strand 7	E	75	77	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	40	first strand
Strand 2	E	52	59	anti-parallel
Strand 3	E	87	94	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	38	40	first strand
Strand 2	K	52	59	anti-parallel
Strand 3	K	87	96	anti-parallel
Strand 4	K	75	78	anti-parallel
Strand 5	K	68	70	anti-parallel
Strand 6	K	111	118	anti-parallel
Strand 7	K	122	131	anti-parallel
Strand 8	K	44	47	parallel
Strand 9	K	52	59	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	64	65	first strand
Strand 2	K	83	84	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	40	first strand
Strand 2	F	52	59	anti-parallel
Strand 3	F	89	96	anti-parallel
Strand 4	F	75	78	anti-parallel
Strand 5	F	66	70	anti-parallel
Strand 6	F	111	118	anti-parallel
Strand 7	F	123	131	anti-parallel
Strand 8	F	44	47	parallel
Strand 9	F	52	59	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	38	40	first strand
Strand 2	L	52	59	anti-parallel
Strand 3	L	44	47	anti-parallel
Strand 4	L	123	131	parallel
Strand 5	L	111	117	anti-parallel
Strand 6	L	68	70	anti-parallel
Strand 7	L	75	76	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	38	40	first strand
Strand 2	L	52	59	anti-parallel
Strand 3	L	89	94	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	64	65	first strand
Strand 2	L	83	84	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	38	40	first strand
Strand 2	G	57	59	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	77	first strand
Strand 2	G	66	70	anti-parallel
Strand 3	G	111	118	anti-parallel
Strand 4	G	123	131	anti-parallel
Strand 5	G	44	47	parallel
Strand 6	G	52	54	anti-parallel
Strand 7	G	93	94	anti-parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	38	40	first strand
Strand 2	M	52	59	anti-parallel
Strand 3	M	90	96	anti-parallel
Strand 4	M	75	78	anti-parallel
Strand 5	M	66	70	anti-parallel
Strand 6	M	111	118	anti-parallel
Strand 7	M	122	131	anti-parallel
Strand 8	M	44	47	parallel
Strand 9	M	52	59	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	38	40	first strand
Strand 2	H	57	59	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	75	76	first strand
Strand 2	H	64	70	anti-parallel
Strand 3	H	83	84	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	75	76	first strand
Strand 2	H	64	70	anti-parallel
Strand 3	H	111	118	anti-parallel
Strand 4	H	123	131	anti-parallel
Strand 5	H	44	47	parallel
Strand 6	H	52	55	anti-parallel
Strand 7	H	91	94	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	38	40	first strand
Strand 2	N	52	59	anti-parallel
Strand 3	N	44	47	anti-parallel
Strand 4	N	123	131	parallel
Strand 5	N	111	118	anti-parallel
Strand 6	N	66	70	anti-parallel
Strand 7	N	75	76	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	38	40	first strand
Strand 2	N	52	59	anti-parallel
Strand 3	N	89	94	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FK0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FK0