Analysis of interatomic Contacts of Structural Units in PDB entry:
8FKB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FKB entry

There is 1 chain in PDB entry 8FKB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 6ARG 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8FKB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 24Right-handed 310
Helix 2
AA2
A
28 34Right-handed alpha
Helix 3
AA3
A
35 50Right-handed alpha
Helix 4
AA4
A
74 83Right-handed alpha
Helix 5
AA5
A
100 102Right-handed 310
Helix 6
AA6
A
103 109Right-handed alpha
Helix 7
AA7
A
110 113Right-handed 310
Helix 8
AA8
A
116 128Right-handed alpha
Helix 9
AA9
A
130 156Right-handed alpha
Helix 10
AB1
A
163 167Right-handed alpha
Helix 11
AB2
A
169 181Right-handed alpha
Helix 12
AB3
A
183 185Right-handed 310
Helix 13
AB4
A
186 200Right-handed alpha
Helix 14
AB5
A
208 233Right-handed alpha
Helix 15
AB6
A
237 245Right-handed alpha
Helix 16
AB7
A
253 268Right-handed alpha
Helix 17
AB8
A
269 286Right-handed alpha
Helix 18
AB9
A
286 296Right-handed alpha
Helix 19
AC1
A
296 313Right-handed alpha
Helix 20
AC2
A
343 347Right-handed alpha
Helix 21
AC3
A
381 400Right-handed alpha
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There are 4 sheets in PDB entry 8FKB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
69 72anti-parallel
Strand 3
A
338 342parallel
Strand 4
A
317 322anti-parallel
Strand 5
A
88 89anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
424 426anti-parallel
Strand 3
A
404 405anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 328first strand
Strand 2
A
331 333anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 411first strand
Strand 2
A
420 422anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il